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[192700_s_at] BTB (also known as BR-C/Ttk) domain.

Description F38H4.7 /REP_DB=WormBase Gene ID /WP=CE17807 /TR=Q20183 /GB=CAB01179.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 23      6grp_highest_sub > Da      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 334.9
(-0)
P 		308.7
(-0.9)
P 		247
(-3)
P 		423.6
(3)
P 		177
B 502
(3)
P 		325.3
(-1.1)
P 		244.6
(-3)
P 		331.1
(-1)
P 		257
C 416.8
(2.1)
P 		227.8
(-3)
P 		360.6
(0.6)
P 		449.6
(3)
P 		222
avr 417.9
(3) 		287.3
(-2.9) 		284.1
(-3) 		401.4
(2.3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 409.7
(0.8)
P 		476
(3)
P 		354.8
(-1)
P 		409.3
(0.8)
P 		292.3
(-3)
P 		447.6
(2.1)
P 		184
B 340.9
(-1.4)
P 		305.8
(-3)
P 		356.4
(-0.6)
P 		423.1
(2.5)
P 		434.7
(3)
P 		432.2
(2.9)
P 		129
C 365.6
(-1.1)
P 		334.4
(-2.4)
P 		422.5
(1.4)
P 		461.4
(3)
P 		319.9
(-3)
P 		455.8
(2.8)
P 		142
avr 372.1
(-1.6) 		372.1
(-1.6) 		377.9
(-1.2) 		431.3
(2.1) 		349
(-3) 		445.2
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 121.9
(3)
P 		67
(-2.5)
P 		64.6
(-2.7)
P 		62
(-3)
P 		60
B 160.1
(3)
P 		80.3
(-1.6)
P 		56.7
(-3)
P 		70.6
(-2.2)
P 		103
C 138
(3)
P 		65.5
(-3)
P 		125.7
(2)
P 		75.8
(-2.1)
P 		73
avr 140
(3) 		70.9
(-2.9) 		82.3
(-1.9) 		69.5
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 75.5
(-3)
P 		169.3
(3)
P 		77.3
(-2.9)
P 		103.8
(-1.2)
P 		88.2
(-2.2)
P 		109
(-0.9)
P 		94
B 118.6
(-0.9)
P 		101.8
(-2)
P 		86.5
(-3)
P 		112.1
(-1.3)
P 		176.6
(3)
P 		161.2
(2)
P 		90
C 135.5
(1.3)
P 		102
(-2.1)
P 		107.5
(-1.5)
P 		92.8
(-3)
P 		103.5
(-1.9)
P 		152.6
(3)
P 		60
avr 109.9
(-0.7) 		124.4
(1) 		90.4
(-3) 		102.9
(-1.5) 		122.8
(0.8) 		140.9
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192700_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8618
Sequence Type Exemplar sequence
Representative Public ID F38H4.7 NCBI
Target Description F38H4.7 /REP_DB=WormBase Gene ID /WP=CE17807 /TR=Q20183 /GB=CAB01179.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069843 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-30) (tag-30) mRNA, complete cds. 11/11 None
SNAP00000007680 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11851004:11854854:-1 11/11 None
GENEFINDER00000007691 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11851004:11852054:-1 11/11 None
F38H4.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:11850920:11854916:-1 gene:F38H4.7 11/11 None
F38H4.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:11850922:11855129:-1 gene:F38H4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11851009-11854860(-) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Gene Symbol tag-30
Ensembl F38H4.7
Entrez Gene 178116 Entrez gene
SwissProt Q20183 EMBL-EBI
WormBase CE17807 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.29704.1.S1_AT similar to BTB (POZ) domain containing 2 cfa
CHICKEN:GGA.5670.1.S1_AT similar to BTB (POZ) domain containing 2 gga
CHICKEN:GGAAFFX.654.1.S1_AT similar to BTB (POZ) domain containing 2 gga
HG-U95AV2:35155_AT BTB (POZ) domain containing 2 hs
HG-U133_PLUS_2:207722_S_AT BTB (POZ) domain containing 2 hs
HG-U133A:207722_S_AT BTB (POZ) domain containing 2 hs
HG-FOCUS:207722_S_AT BTB (POZ) domain containing 2 hs
HG-U133A_2:207722_S_AT BTB (POZ) domain containing 2 hs
HU35KSUBA:RC_AA478305_AT BTB (POZ) domain containing 2 hs
U133_X3P:G8923361_3P_A_AT BTB (POZ) domain containing 2 hs
HG-U95AV2:35154_AT BTB (POZ) domain containing 2 hs
MG-U74BV2:108582_AT BTB (POZ) domain containing 2 mm
MG-U74BV2:162740_AT BTB (POZ) domain containing 2 mm
MOE430A:1424054_AT BTB (POZ) domain containing 2 mm
MOUSE430A_2:1424054_AT BTB (POZ) domain containing 2 mm
MOUSE430_2:1424054_AT BTB (POZ) domain containing 2 mm
MU19KSUBA:TC15379_AT BTB (POZ) domain containing 2, mRNA (cDNA clone IMAGE:3593599) mm
MU19KSUBA:TC15380_AT BTB (POZ) domain containing 2, mRNA (cDNA clone IMAGE:3593599) mm
MU19KSUBA:TC16965_AT BTB (POZ) domain containing 2, mRNA (cDNA clone IMAGE:3593599) mm
MU19KSUBA:TC23336_AT BTB (POZ) domain containing 2, mRNA (cDNA clone IMAGE:3593599) mm
RG-U34C:RC_AI230326_AT similar to BTB (POZ) domain containing 2 rn
RAE230A:1372617_AT similar to BTB (POZ) domain containing 2 rn
RAT230_2:1372617_AT similar to BTB (POZ) domain containing 2 rn
RAE230A:1375243_AT Similar to BTB (POZ) domain containing 2 rn
RAT230_2:1375243_AT Similar to BTB (POZ) domain containing 2 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01179 Hypothetical protein F38H4.7 [Caenorhabditis elegans] ref|NP_502244.1| Temporarily Assigned Gene name family member (tag-30) [Caenorhabditis elegans] 0.0
blast CAE62132 Hypothetical protein CBG06176 [Caenorhabditis briggsae] 0.0
blast NP_060267 BTB (POZ) domain containing 2 [Homo sapiens] gb|AAK25826.1| BTBD2 protein [Homo sapiens] sp|Q9BX70|BTBD2_HUMAN BTB/POZ domain containing protein 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-28
Sequence
Target Sequence 
>C. ELEGANS:192700_S_AT
ttcaaatatctcgcagtgtctccaccagatcgaccagttcttgtctactctgataggcca
cgatgtcagatttcaagcacagagtacgtggtttcaagatttcaacgaatcgagaatcgt
tggggattctgtggcacgtctgatcgtatcaagtttatggtggatcggcgtatttttgtt
gtcggattcgggctttatggtgcaatttctggaccacatgaatataagacgcaaatcaag
attatccattgtggaacgaacaaaacattggccgagcatgataccagttttgtgtgtgac
ggaaattctagaccatgccgagtctgtttcaaagagccggtggagattcttcctggtata
acctatattgcagcagctctgatcaggggccctgactcgtattacggcacaaaaggtctt
cggcgtgtcagcactcacgacagcgacgtgacgttccaattcacatatgcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAATATCTCGCAGTGTCTCCAC 98 687 1276 Antisense
AGATCGACCAGTTCTTGTCTACTCT 201 67 1302 Antisense
GTCTACTCTGATAGGCCACGATGTC 535 469 1318 Antisense
GATTCTGTGGCACGTCTGATCGTAT 225 433 1400 Antisense
GGATCGGCGTATTTTTGTTGTCGGA 557 511 1437 Antisense
GTCGGATTCGGGCTTTATGGTGCAA 247 473 1456 Antisense
GGCCGAGCATGATACCAGTTTTGTG 285 541 1545 Antisense
AGAGCCGGTGGAGATTCTTCCTGGT 619 69 1608 Antisense
ATTGCAGCAGCTCTGATCAGGGGCC 137 3 1642 Antisense
GGCACAAAAGGTCTTCGGCGTGTCA 564 523 1681 Antisense
GACGTTCCAATTCACATATGCAGCA 231 379 1725 Antisense
Sequence Source Affymetrix Proprietary Database