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[192699_s_at]

Description C01G6.1A /REP_DB=WormBase Gene ID /WP=CE00863 /TR=Q17571 /GB=CAA84633.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glycerol uptake facilitator protein
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 0      4grp_high_8_8 > 43      6grp_highest_nonorm > 05      6grp_total > 26      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5048
1 2 3 4 range
A 7358.3
(1.4)
P 		8358.6
(3)
P 		5520.5
(-1.4)
P 		4494.3
(-3)
P 		3864
B 7259.8
(0.8)
P 		8881.5
(3)
P 		5757.3
(-1.2)
P 		4376.9
(-3)
P 		4505
C 7239.3
(1.6)
P 		8248.8
(3)
P 		5450.8
(-0.8)
P 		3833.2
(-3)
P 		4416
avr 7285.8
(1.3) 		8496.3
(3) 		5576.2
(-1.1) 		4234.8
(-3) 		4262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6831
1 2 3 4 5 6 range
A 10881.8
(3)
P 		8589.6
(1)
P 		4695.2
(-2.4)
P 		4050.6
(-3)
P 		4696.1
(-2.4)
P 		6327.9
(-1)
P 		6831
B 9231.3
(3)
P 		7927.1
(1.5)
P 		5379
(-1.5)
P 		4728.4
(-2.2)
P 		4053.9
(-3)
P 		5095.5
(-1.8)
P 		5177
C 9324
(3)
P 		7645.9
(1)
P 		5940.7
(-1)
P 		4188.4
(-3)
P 		4771.1
(-2.3)
P 		5282.8
(-1.7)
P 		5136
avr 9812.4
(3) 		8054.2
(1.1) 		5338.3
(-1.9) 		4322.5
(-3) 		4507
(-2.8) 		5568.7
(-1.6) 		5490
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2033
1 2 3 4 range
A 2679.2
(3)
P 		1814.4
(0.4)
P 		1443.2
(-0.7)
P 		657.9
(-3)
P 		2021
B 2315.1
(3)
P 		2193.5
(2.5)
P 		1334.1
(-1.3)
P 		932.7
(-3)
P 		1382
C 2396.4
(3)
P 		2371.6
(2.9)
P 		1899.8
(1.3)
P 		646.3
(-3)
P 		1750
avr 2463.6
(3) 		2126.5
(1.8) 		1559
(-0.2) 		745.6
(-3) 		1718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2614
1 2 3 4 5 6 range
A 2006
(-0.1)
P 		3054.9
(3)
P 		1022.5
(-3)
P 		1027.3
(-3)
P 		1417.1
(-1.8)
P 		1540.6
(-1.5)
P 		2032
B 3212
(3)
P 		2638.6
(1.2)
P 		1306.2
(-2.8)
P 		1252.4
(-3)
P 		1647
(-1.8)
P 		1900.1
(-1)
P 		1960
C 3456
(3)
P 		2333
(0.4)
P 		1512
(-1.5)
P 		842.3
(-3)
P 		1543.9
(-1.4)
P 		1768.4
(-0.9)
P 		2614
avr 2891.3
(3) 		2675.5
(2.3) 		1280.2
(-2.2) 		1040.7
(-3) 		1536
(-1.4) 		1736.4
(-0.7) 		1851
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192699_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3285
Sequence Type Exemplar sequence
Representative Public ID C01G6.1A NCBI
Target Description C01G6.1A /REP_DB=WormBase Gene ID /WP=CE00863 /TR=Q17571 /GB=CAA84633.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glycerol uptake facilitator protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063572(11), NM_063571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063572 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-2) (aqp-2) mRNA, complete cds. 11/11 None
NM_063571 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-2) (aqp-2) mRNA, complete cds. 11/11 None
SNAP00000013214 ENSEMBL cdna:SNAP chromosome:CEL140:II:9259519:9261884:-1 11/11 None
GENEFINDER00000013240 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9259271:9261884:-1 11/11 None
C01G6.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:9258824:9261890:-1 gene:C01G6.1 11/11 None
C01G6.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:9258824:9261892:-1 gene:C01G6.1 11/11 None
C01G6.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:9258824:9261884:-1 gene:C01G6.1 11/11 A 
C01G6.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:9258961:9261884:-1 gene:C01G6.1 11/11 A 
C01G6.1b.3 ENSEMBL cdna:known chromosome:CEL140:II:9259519:9261905:-1 gene:C01G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9259267-9261881(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84633 Hypothetical protein C01G6.1a [Caenorhabditis elegans] ref|NP_495972.1| AQuaPorin or aquaglyceroporin related family member (aqp-2) [Caenorhabditis elegans] 1.0E-151
blast CAA84642 Hypothetical protein C01G6.1b [Caenorhabditis elegans] ref|NP_495973.1| AQuaPorin or aquaglyceroporin related family member (aqp-2) [Caenorhabditis elegans] 1.0E-149
blast CAA84633 Hypothetical protein C01G6.1a [Caenorhabditis elegans] ref|NP_495972.1| AQuaPorin or aquaglyceroporin related family member (aqp-2) [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR000425 EMBL-EBI Major intrinsic protein 6.4E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495973.1 6 16-38,53-75,96-118,152-174,187-209,232-254
NP_495972.1 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1b.1 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1b.2 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1a.2 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1a.1 6 16-38,53-75,96-118,152-174,187-209,232-254
C01G6.1b.3 6 16-38,53-75,96-118,152-174,187-209,232-254
SNAP00000013214 6 16-38,53-75,96-118,152-174,187-209,232-254
GENEFINDER00000013240 6 16-38,53-75,96-118,152-174,187-209,232-254
Sequence
Target Sequence 
>C. ELEGANS:192699_S_AT
ccaattcttcggagctttcttcggagccgccaccgtctacgccgtctacaatgacgccat
caatgtgtttgacggaggagttcgtaccgttggaggaccaaaggacaccgccggaatctt
cgcctcttacccagctccacacctcggacttgtcaacggatttgtcgatcaattcgtcgc
caccgccgttttcgtcttcctgatcgctcacatcgtcgacaagcgcaactcttacccaac
atggcttcagccaatccttgtcggaaccggattcgtcgccatcggagccgccttcggata
caactgcggatacccagtcaacccagctcgtgactttgcaccacgtctcttcacctccat
cttctacggaggagctgtcttcaccaagtggttctgggttccaattgttggaccattcgt
cggagctgtcgtcggaatctggctttactacttcttgattggattccacactccacaaga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATTCTTCGGAGCTTTCTTCGGA 310 277 318 Antisense
GTCTACGCCGTCTACAATGACGCCA 301 469 352 Antisense
CAAAGGACACCGCCGGAATCTTCGC 604 189 416 Antisense
CACACCTCGGACTTGTCAACGGATT 65 189 455 Antisense
ATTTGTCGATCAATTCGTCGCCACC 242 19 477 Antisense
TCACATCGTCGACAAGCGCAACTCT 140 629 525 Antisense
TCTTACCCAACATGGCTTCAGCCAA 619 615 547 Antisense
CTTGTCGGAACCGGATTCGTCGCCA 601 213 574 Antisense
CATCTTCTACGGAGGAGCTGTCTTC 476 213 675 Antisense
TGTCGTCGGAATCTGGCTTTACTAC 537 557 744 Antisense
GATTGGATTCCACACTCCACAAGAC 601 433 774 Antisense
Sequence Source Affymetrix Proprietary Database