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[192698_at]

Description B0361.5 /REP_DB=WormBase Gene ID /WP=CE00834 /TR=SW:Q10949 /GB=AAK18866.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Phosphatidylserine decarboxylase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 96      6grp_total > 66      4grp_total > 11      6grp_highest_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1707
1 2 3 4 range
A 783.9
(-3)
P 		852.6
(-2.6)
P 		788.1
(-3)
P 		1949.3
(3)
P 		1165
B 1064.2
(-1.3)
P 		768.4
(-2.3)
P 		566.9
(-3)
P 		2273.8
(3)
P 		1707
C 753.1
(-2.5)
P 		835.3
(-2.1)
P 		610
(-3)
P 		2190.4
(3)
P 		1580
avr 867.1
(-2.1) 		818.8
(-2.3) 		655
(-3) 		2137.8
(3) 		1483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 1082.2
(1.7)
P 		627.6
(-3)
P 		1003.5
(0.9)
P 		710.9
(-2.1)
P 		799.4
(-1.2)
P 		1211.6
(3)
P 		584
B 814.1
(-1.8)
P 		714.3
(-3)
P 		1045.8
(1.1)
P 		791.5
(-2)
P 		782
(-2.2)
P 		1200.2
(3)
P 		486
C 659.6
(-3)
P 		743.2
(-2.3)
P 		1038.2
(0.2)
P 		719
(-2.5)
P 		663.3
(-3)
P 		1362.2
(3)
P 		703
avr 852
(-1.3) 		695
(-3) 		1029.2
(0.6) 		740.5
(-2.5) 		748.2
(-2.4) 		1258
(3) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 285.4
(3)
P 		185.1
(-3)
P 		206
(-1.7)
P 		285.3
(3)
P 		100
B 339.4
(0.5)
P 		189.8
(-2)
P 		131.4
(-3)
P 		484.6
(3)
P 		353
C 249.3
(-1.6)
P 		240.1
(-1.9)
P 		212.6
(-3)
P 		369.3
(3)
P 		157
avr 291.4
(0.3) 		205
(-2.3) 		183.3
(-3) 		379.7
(3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 199.5
(-2)
P 		223.2
(-0.8)
P 		218.6
(-1)
P 		180.3
(-3)
P 		241.2
(0.2)
P 		295
(3)
P 		115
B 283.3
(-1.1)
P 		237.8
(-2.3)
P 		253.9
(-1.9)
P 		209.6
(-3)
P 		317.7
(-0.3)
P 		447.6
(3)
P 		238
C 244.5
(-1.1)
P 		226.8
(-1.4)
P 		264.2
(-0.7)
P 		144.6
(-3)
P 		214.6
(-1.7)
P 		456
(3)
P 		311
avr 242.4
(-1.3) 		229.3
(-1.6) 		245.6
(-1.2) 		178.2
(-3) 		257.8
(-0.8) 		399.5
(3) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7924
Sequence Type Exemplar sequence
Representative Public ID B0361.5 NCBI
Target Description B0361.5 /REP_DB=WormBase Gene ID /WP=CE00834 /TR=SW:Q10949 /GB=AAK18866.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Phosphatidylserine decarboxylase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025957(11), NM_001025956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025957 NCBI Caenorhabditis elegans B0361.5b (B0361.5) mRNA, complete cds. 11/11 None
NM_001025956 NCBI Caenorhabditis elegans B0361.5a (B0361.5) mRNA, complete cds. 11/11 None
SNAP00000011044 ENSEMBL cdna:SNAP chromosome:CEL140:III:7268621:7270466:-1 11/11 None
GENEFINDER00000011060 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7268621:7275096:-1 11/11 None
B0361.5b ENSEMBL cdna:known chromosome:CEL140:III:7268337:7275318:-1 gene:B0361.5 11/11 None
B0361.5a ENSEMBL cdna:known chromosome:CEL140:III:7268621:7271066:-1 gene:B0361.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7268618-7270907(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0361.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92090 Hypothetical protein B0361.5b [Caenorhabditis elegans] ref|NP_001021128.1| B0361.5b [Caenorhabditis elegans] sp|Q10949|PISD_CAEEL Putative phosphatidylserine decarboxylase proenzyme [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] 0.0
blast AAK18866 Hypothetical protein B0361.5a [Caenorhabditis elegans] ref|NP_001021127.1| B0361.5a [Caenorhabditis elegans] 0.0
blast CAE56439 Hypothetical protein CBG24141 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003817 EMBL-EBI Phosphatidylserine decarboxylase-related 4.7E-49
Pfam IPR003817 EMBL-EBI Phosphatidylserine decarboxylase-related 4.7E-49
Pfam IPR003817 EMBL-EBI Phosphatidylserine decarboxylase-related 4.7E-49
Pfam IPR003817 EMBL-EBI Phosphatidylserine decarboxylase-related 4.7E-49
Sequence
Target Sequence 
>C. ELEGANS:192698_AT
ttctccattagtttctccagcagatggaacagttcttcattttggaaaagttgaagataa
caagattgaatatgtgaaaggacatgactacgacgtggataaattccttggtgatgtgga
tcttccacaaaaagatgaactcgacttgtatcaagttgtcatctatttggcacctggaga
ttatcatgcattccattcacctgcaagatgggttgccaatcaatgtcgtcatgttccggg
actgcttctatcggttcgaccgactctgttgagtcatgtgccacatttattctgtttgaa
tgaacgagttgtgctcaatggtagctggagacacggattcttttcaatgtctgctgtcgc
tgcaacaaacgtcggagacattgtcgtcgacgccgaaccttcactccgaacgaacattgt
tcgcaggaaaactcagaaaataatgaacactgaaacagaaatccatgcaccatatgtttc
gggtgaacgtgttggagagttccgtctcggatcgacgatcgtcctcgttttccaagctcc
acccactattaaatttgccatcaaagcgggtgacccacttcgatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCATTAGTTTCTCCAGCAGAT 695 691 399 Antisense
AGTTGTCATCTATTTGGCACCTGGA 246 65 552 Antisense
GATTATCATGCATTCCATTCACCTG 598 429 577 Antisense
TCAATGTCGTCATGTTCCGGGACTG 605 631 618 Antisense
ATCGGTTCGACCGACTCTGTTGAGT 47 35 648 Antisense
TTCAATGTCTGCTGTCGCTGCAACA 244 683 741 Antisense
GTCGGAGACATTGTCGTCGACGCCG 663 471 769 Antisense
AACCTTCACTCCGAACGAACATTGT 181 147 794 Antisense
AGTTCCGTCTCGGATCGACGATCGT 76 65 896 Antisense
AGCTCCACCCACTATTAAATTTGCC 265 81 933 Antisense
CAAAGCGGGTGACCCACTTCGATAC 500 189 960 Antisense
Sequence Source Affymetrix Proprietary Database