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[192697_at] chromosome segregation protein like

Description C44C10.5 /REP_DB=WormBase Gene ID /WP=CE05412 /TR=Q18617 /GB=CAA93639.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=chromosome segregation protein like
Cluster 6grp_total > 94      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 16.1
(-2.7)
A 		11.5
(-3)
A 		56.7
(0.4)
A 		91.2
(3)
A 		80
B 38.7
(-0.3)
A 		18.7
(-3)
A 		44.3
(0.5)
A 		62.9
(3)
A 		44
C 14
(-2.4)
A 		13.1
(-2.5)
A 		7.5
(-3)
A 		74.3
(3)
A 		67
avr 22.9
(-2.2) 		14.4
(-3) 		36.2
(-0.9) 		76.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.7
(1)
A 		55.2
(3)
A 		32.8
(-3)
A 		53.3
(2.5)
A 		43.7
(-0.1)
A 		33.8
(-2.7)
A 		22
B 12.8
(-2.4)
A 		21.5
(-1)
A 		9.3
(-3)
A 		10.6
(-2.8)
A 		45.4
(3)
A 		39.1
(2)
A 		36
C 15.8
(-2.7)
A 		31.2
(1.2)
A 		14.7
(-3)
A 		38.3
(3)
A 		38.1
(2.9)
A 		25.6
(-0.2)
A 		24
avr 25.4
(-1.3) 		36
(1.4) 		18.9
(-3) 		34.1
(0.9) 		42.4
(3) 		32.8
(0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.8
(-1.4)
A 		2.5
(-3)
A 		14.8
(3)
A 		13.3
(2.3)
A 		12
B 12.4
(2.3)
A 		4.6
(-3)
A 		10.3
(0.9)
A 		13.4
(3)
A 		9
C 4.6
(-1.8)
A 		3.8
(-2.3)
A 		2.6
(-3)
A 		12.5
(3)
A 		10
avr 7.6
(-0.5) 		3.6
(-3) 		9.2
(0.5) 		13.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.8
(-2.2)
A 		19.6
(3)
A 		7.1
(-3)
A 		13.5
(0.1)
A 		13.2
(-0.1)
A 		8.2
(-2.5)
A 		13
B 4.4
(-2.2)
A 		7.2
(-1.2)
A 		2.3
(-3)
A 		2.8
(-2.8)
A 		18.4
(3)
A 		14.6
(1.6)
A 		16
C 5.8
(-1.5)
A 		9.5
(1)
A 		3.7
(-3)
A 		7.7
(-0.2)
A 		12.3
(3)
A 		8.6
(0.4)
A 		9
avr 6.3
(-1.9) 		12.1
(1.5) 		4.4
(-3) 		8
(-0.9) 		14.6
(3) 		10.5
(0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16499
Sequence Type Exemplar sequence
Representative Public ID C44C10.5 NCBI
Target Description C44C10.5 /REP_DB=WormBase Gene ID /WP=CE05412 /TR=Q18617 /GB=CAA93639.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=chromosome segregation protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077554 NCBI Caenorhabditis elegans C44C10.5 (C44C10.5) mRNA, complete cds. 11/11 None
SNAP00000037966 ENSEMBL cdna:SNAP chromosome:CEL140:X:11691272:11692303:1 9/11 None
C44C10.5 ENSEMBL cdna:known chromosome:CEL140:X:11691029:11692376:1 gene:C44C10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037987 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11691028-11692376(+) 100.0 100.0
Public Domain and Genome References
Gene Title chromosome segregation protein like
Ensembl C44C10.5
Entrez Gene 183454 Entrez gene
SwissProt Q18617 EMBL-EBI
WormBase CE05412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93639 Hypothetical protein C44C10.5 [Caenorhabditis elegans] ref|NP_509955.1| C44C10.5 [Caenorhabditis elegans] 1.0E-168
blast CAA93639 Hypothetical protein C44C10.5 [Caenorhabditis elegans] ref|NP_509955.1| C44C10.5 [Caenorhabditis elegans] 7.0E-89
blast CAA93638 Hypothetical protein C44C10.4 [Caenorhabditis elegans] ref|NP_509956.2| C44C10.4 [Caenorhabditis elegans] 8.0E-25
blast CAD58850 SMC1 protein cohesin subunit [Gallus gallus] ref|NP_989847.1| SMC1 protein cohesin subunit [Gallus gallus] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:192697_AT
ctcctcccgcaatgttcaaggttcaaggctgttcaaggctggatggtgacagtttatccc
aagagaacgcagaaaaaccggctattgtcatcgaactagaaaatcgactcgtccaacaac
gtgcacaacgtcgaaaaatcattgcaaatgtcactttacaggatcttgatattcctgcca
aagaagcaggtacgttttcctacgacgtcaaaccggattattcctccttaccagatgagt
tgaagaaggaaagcaacgatgctgaaacagttaagatgcatctgcgtactttggaggaaa
cgatccaggcaactcgtaacgaatgggttgctgtcaatggagcagagtatccggatatga
gtaatattttaataagattccacgagacggacagctttattaacatagcaaagttacgca
caactgagctagaagccgaaattgaacaggtcaaagccagtcgccgtactcatttcaatc
aacgccttgctgcagtatcatcgtctgtgagcagaatctatagagagatttctgaggatc
cggattccaccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCCCGCAATGTTCAAGGTTCA 503 231 335 Antisense
GGTTCAAGGCTGTTCAAGGCTGGAT 340 507 354 Antisense
AAAACCGGCTATTGTCATCGAACTA 593 131 408 Antisense
AAATCGACTCGTCCAACAACGTGCA 550 117 435 Antisense
GAAGCAGGTACGTTTTCCTACGACG 28 337 517 Antisense
GACGTCAAACCGGATTATTCCTCCT 215 377 538 Antisense
GATGCATCTGCGTACTTTGGAGGAA 114 413 609 Antisense
TGAACAGGTCAAAGCCAGTCGCCGT 635 571 777 Antisense
GTCGCCGTACTCATTTCAATCAACG 127 475 794 Antisense
ATCAACGCCTTGCTGCAGTATCATC 100 27 812 Antisense
TTCTGAGGATCCGGATTCCACCGTT 333 691 864 Antisense
Sequence Source Affymetrix Proprietary Database