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[192695_at]

Description C05D2.4 /REP_DB=WormBase Gene ID /WP=CE01141 /TR=O45137 /GB=AAC02721.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=aromatic-L-amino-acid decarboxylase
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 51      6grp_total > 32      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 1003.4
(3)
P 		707.3
(0.5)
P 		879.7
(2)
P 		290
(-3)
P 		713
B 718.5
(2.1)
P 		714.3
(2.1)
P 		798.8
(3)
P 		243.1
(-3)
P 		556
C 1014.1
(3)
P 		804.8
(1.3)
P 		914.2
(2.2)
P 		270.4
(-3)
P 		744
avr 912
(3) 		742.1
(1.4) 		864.2
(2.6) 		267.8
(-3) 		644

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 642
1 2 3 4 5 6 range
A 747.6
(3)
P 		679.3
(2)
P 		714.2
(2.5)
P 		689
(2.1)
P 		407.6
(-1.9)
P 		335.4
(-3)
P 		412
B 720
(3)
P 		597.5
(1.4)
P 		609.9
(1.5)
P 		560.1
(0.9)
P 		436
(-0.8)
P 		271.9
(-3)
P 		448
C 802.7
(2.2)
P 		633.1
(0.7)
P 		884
(3)
P 		638.9
(0.7)
P 		465.5
(-0.9)
P 		241.6
(-3)
P 		642
avr 756.8
(3) 		636.6
(1.5) 		736
(2.7) 		629.3
(1.4) 		436.4
(-1.1) 		283
(-3) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 365.3
(3)
P 		153.5
(-0.9)
P 		230
(0.5)
P 		42.5
(-3)
P 		323
B 229.1
(3)
P 		176.4
(1.2)
P 		185.1
(1.5)
P 		51.8
(-3)
P 		177
C 335.7
(3)
P 		231.4
(0.8)
P 		318.6
(2.6)
P 		45.6
(-3)
P 		290
avr 310
(3) 		187.1
(0.2) 		244.6
(1.5) 		46.6
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 137.8
(-0.9)
P 		241.6
(3)
P 		155.5
(-0.2)
P 		174.7
(0.5)
P 		123
(-1.5)
P 		81.7
(-3)
P 		160
B 250.5
(3)
P 		198.9
(0.9)
P 		148.1
(-1.1)
P 		148.3
(-1.1)
P 		177.1
(0)
P 		101.4
(-3)
P 		149
C 297.5
(3)
P 		193.2
(0.1)
P 		225
(1)
P 		128.5
(-1.7)
P 		150.6
(-1.1)
P 		80.9
(-3)
P 		217
avr 228.6
(3) 		211.2
(2.3) 		176.2
(0.8) 		150.5
(-0.3) 		150.2
(-0.3) 		88
(-3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6519
Sequence Type Exemplar sequence
Representative Public ID C05D2.4 NCBI
Target Description C05D2.4 /REP_DB=WormBase Gene ID /WP=CE01141 /TR=O45137 /GB=AAC02721.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=aromatic-L-amino-acid decarboxylase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025979(11), NM_001025980(11), AY669394(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025979 NCBI Caenorhabditis elegans Biogenic Amine Synthesis related family member (bas-1) (bas-1) mRNA, complete cds. 11/11 None
NM_001025980 NCBI Caenorhabditis elegans Biogenic Amine Synthesis related family member (bas-1) (bas-1) mRNA, complete cds. 11/11 None
AY669394 NCBI Caenorhabditis elegans aromatic L-amino acid decarboxylase (bas-1) mRNA, partial cds, alternatively spliced. 10/11 None
SNAP00000007736 ENSEMBL cdna:SNAP chromosome:CEL140:III:5612241:5614555:1 11/11 None
GENEFINDER00000007742 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5612241:5614555:1 11/11 None
C05D2.4a ENSEMBL cdna:known chromosome:CEL140:III:5612226:5614606:1 gene:C05D2.4 11/11 None
C05D2.4b ENSEMBL cdna:known chromosome:CEL140:III:5612226:5614555:1 gene:C05D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5612239-5614554(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05D2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV58886 Biogenic amine synthesis related protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021150.1| Biogenic Amine Synthesis related family member (bas-1) [Caenorhabditis elegans] 0.0
blast AAC02721 Biogenic amine synthesis related protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021151.1| Biogenic Amine Synthesis related family member (bas-1) [Caenorhabditis elegans] 0.0
blast CAE64293 Hypothetical protein CBG08967 [Caenorhabditis briggsae] 0.0
blast AAU05399 aromatic L-amino acid decarboxylase [Caenorhabditis elegans] 0.0
blast AAU05398 aromatic L-amino acid decarboxylase [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 8.1E-47
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 6.0E-76
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 6.0E-76
Sequence
Target Sequence 
>C. ELEGANS:192695_AT
tgctggaacatttgctctctgcgaggagttcaagtacttgatccggggtatggagcacgt
ggattcattcaatttcaacctacataaagctggaatggttaactttgactgctcgccaat
gtggttcaagaacggaactcatgtatcccgttatttcaatgtagatgccgtatatctagc
tcacgaatatcaaacaactgcctcagattataggcacttacaagtcgccttgggccggag
attcagatctctgaaaatttggtttgtcctcagaaatatgggcgtcgacaagattcgcga
gtatctgagacggaccgagctcttggctgctgaattctccaagttgattctggaaaacgg
aaagtttgagcatttcgtgccgcagcatttgggactcacatgtttccgattgaaaaatag
caccaacgcggataatgagaagctctgtaacgcaatcaatgatgatcgcagaatccactt
ggttccatcaacagttcacggaacctatttccttcgaatggttgtttgcagtcagctaac
aactctagatgacattatttacgcccgtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGGAACATTTGCTCTCTGCGAG 91 583 954 Antisense
GAATGGTTAACTTTGACTGCTCGCC 683 331 1046 Antisense
GACTGCTCGCCAATGTGGTTCAAGA 332 375 1060 Antisense
GGAACTCATGTATCCCGTTATTTCA 492 529 1087 Antisense
ATGCCGTATATCTAGCTCACGAATA 678 41 1118 Antisense
ACAAGTCGCCTTGGGCCGGAGATTC 473 113 1173 Antisense
TCTGAGACGGACCGAGCTCTTGGCT 233 607 1257 Antisense
TTCGTGCCGCAGCATTTGGGACTCA 103 687 1327 Antisense
TGGGACTCACATGTTTCCGATTGAA 398 553 1343 Antisense
GATCGCAGAATCCACTTGGTTCCAT 307 417 1417 Antisense
AGATGACATTATTTACGCCCGTGAC 38 67 1500 Antisense
Sequence Source Affymetrix Proprietary Database