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[192694_s_at] serine/threonine protein phosphatase /// serine/threonine protein phosphatase

Description R08A2.2 /REP_DB=WormBase Gene ID /WP=CE23903 /TR=Q9U395 /GB=CAB57902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 89      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 10.1
(-3)
A 		15.4
(-2.5)
A 		12.7
(-2.8)
A 		72.7
(3)
P 		63
B 32.7
(3)
P 		12
(-1.2)
A 		3
(-3)
A 		18.3
(0.1)
A 		30
C 1
(-3)
A 		2
(-2.9)
A 		12.9
(-1.9)
A 		64.3
(3)
A 		63
avr 14.6
(-2.3) 		9.8
(-3) 		9.5
(-3) 		51.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 45.1
(0.7)
A 		18.3
(-3)
A 		33
(-1)
A 		33.3
(-0.9)
A 		61.9
(3)
P 		49.2
(1.3)
P 		44
B 25.1
(-3)
M 		35
(-0.8)
A 		32.5
(-1.3)
M 		26.6
(-2.7)
A 		41.4
(0.7)
P 		51.6
(3)
A 		27
C 15.1
(-3)
A 		29.1
(-0.8)
P 		15.6
(-2.9)
A 		16.2
(-2.8)
A 		30.4
(-0.6)
A 		53.9
(3)
P 		39
avr 28.4
(-2.3) 		27.5
(-2.5) 		27
(-2.6) 		25.4
(-3) 		44.6
(1.4) 		51.6
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-2.7)
A 		3.3
(-3)
A 		3.3
(-3)
A 		10.6
(3)
P 		7
B 10.4
(3)
P 		3
(-1.6)
A 		0.7
(-3)
A 		3.9
(-1)
A 		10
C 0.3
(-3)
A 		0.6
(-2.8)
A 		4.5
(-0.6)
A 		10.8
(3)
A 		11
avr 4.8
(-0.5) 		2.3
(-3) 		2.8
(-2.5) 		8.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.3
(-2.1)
A 		6.5
(-3)
A 		7.2
(-2.7)
A 		8.4
(-2.1)
A 		18.7
(3)
P 		12
(-0.3)
P 		12
B 8.7
(-2.2)
M 		11.6
(-0.8)
A 		7.9
(-2.6)
M 		7.1
(-3)
A 		16.8
(1.8)
P 		19.3
(3)
A 		12
C 5.6
(-2.1)
A 		8.9
(-0.7)
P 		4
(-2.7)
A 		3.3
(-3)
A 		9.8
(-0.3)
A 		18
(3)
P 		15
avr 7.5
(-2.3) 		9
(-1.4) 		6.4
(-2.9) 		6.3
(-3) 		15.1
(2.2) 		16.4
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12898
Sequence Type Exemplar sequence
Representative Public ID R08A2.2 NCBI
Target Description R08A2.2 /REP_DB=WormBase Gene ID /WP=CE23903 /TR=Q9U395 /GB=CAB57902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074231(11), NM_068162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074231 NCBI Caenorhabditis elegans R08A2.2 (R08A2.2) mRNA, complete cds. 11/11 A 
NM_068162 NCBI Caenorhabditis elegans R08C7.8 (R08C7.8) mRNA, complete cds. 11/11 A 
SNAP00000031356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4433079:4434493:-1 11/11 None
GENEFINDER00000031369 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4432677:4434493:-1 11/11 None
SNAP00000001286 ENSEMBL cdna:SNAP chromosome:CEL140:V:14716835:14718262:-1 11/11 None
GENEFINDER00000001294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14716835:14718268:-1 11/11 None
R08C7.8 ENSEMBL cdna:known chromosome:CEL140:IV:4433079:4434534:-1 gene:R08C7.8 11/11 A 
R08A2.2 ENSEMBL cdna:known chromosome:CEL140:V:14716835:14718279:-1 gene:R08A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14716834-14718268(-) 100.0 100.0
chrIV:4433084-4434496(-) 95.09 95.09
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
serine/threonine protein phosphatase
Ensembl R08C7.8
R08A2.2
Entrez Gene 177208 Entrez gene
187692 Entrez gene
SwissProt Q9U395 EMBL-EBI
Q21840 EMBL-EBI
WormBase CE35901 Wormbase
CE07431 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57902 Hypothetical protein R08A2.2 [Caenorhabditis elegans] ref|NP_506632.2| R08A2.2 [Caenorhabditis elegans] 0.0
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-180
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Sequence
Target Sequence 
>C. ELEGANS:192694_S_AT
caaaactgtaactcgtgggaatcattcaaagctctgaagaaaccgaatactccattaacc
tgtgacgaaggtcttcaagttgatttgatgtgggctgatccaactcaagataagtgcaac
acgtttgcaatgaacaaggtatcacaatgcctactatttacattgacaatttgtactttt
cagcaacgcgcaatttctgtagttttcggtgaaaaaggattggatgttttcttgaaaaag
cttggcctctcgttgattgtcagagctcacgaagtgtctcaggaaggattcaacttcttg
ttcaacaaaaaatgtgtcacagtattctctgcaccatattattgtgggaatgataccaat
tgtggagcaattatgcacgtctcggaatcttacgagatatccttcacagttctccgtcca
cgaatgattgcaacacctgaaaatattgaaattgtaaagctgatggagaacaactacaaa
gggctgagggttgcgagtccagatccaaaccgtggtcgtcatttgcaatctgctgatgtt
ccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACTGTAACTCGTGGGAATCAT 232 149 562 Antisense
GTGGGAATCATTCAAAGCTCTGAAG 348 489 576 Antisense
AGCTCTGAAGAAACCGAATACTCCA 594 79 591 Antisense
GAATACTCCATTAACCTGTGACGAA 676 325 606 Antisense
AACCTGTGACGAAGGTCTTCAAGTT 363 145 618 Antisense
GCTCACGAAGTGTCTCAGGAAGGAT 528 299 826 Antisense
AGGAAGGATTCAACTTCTTGTTCAA 262 55 842 Antisense
ACAGTTCTCCGTCCACGAATGATTG 689 107 967 Antisense
TCCGTCCACGAATGATTGCAACACC 374 593 974 Antisense
TGGTCGTCATTTGCAATCTGCTGAT 89 551 1074 Antisense
TCATTTGCAATCTGCTGATGTTCCC 137 621 1080 Antisense
Sequence Source Affymetrix Proprietary Database