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[192693_at] serine/threonine protein phosphatase /// serine/threonine protein phosphatase

Description R08A2.2 /REP_DB=WormBase Gene ID /WP=CE23903 /TR=Q9U395 /GB=CAB57902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2.4
(-3)
A 		3.7
(3)
A 		2.7
(-1.6)
A 		3.5
(2.1)
A 		1
B 5.3
(3)
A 		4.2
(-1.1)
A 		3.7
(-3)
A 		4
(-1.9)
A 		2
C 2.4
(-2.9)
A 		5
(-2.7)
A 		1.4
(-3)
A 		72.6
(3)
A 		71
avr 3.4
(-2.8) 		4.3
(-2.6) 		2.6
(-3) 		26.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(0.8)
A 		5.1
(2.6)
A 		2
(-3)
A 		4.7
(1.9)
A 		5
(2.5)
A 		5.3
(3)
A 		3
B 2.5
(-0.4)
A 		2.1
(-1.1)
A 		4.2
(2.8)
A 		1.8
(-1.7)
A 		4.3
(3)
A 		1.1
(-3)
A 		3
C 3.9
(-1.8)
A 		5.9
(-0.8)
A 		3.5
(-2)
A 		4.9
(-1.3)
A 		1.4
(-3)
A 		13.5
(3)
A 		12
avr 3.5
(-2.5) 		4.4
(-0.9) 		3.2
(-3) 		3.8
(-1.9) 		3.6
(-2.3) 		6.6
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(3)
A 		0.8
(1.5)
A 		0.7
(-0)
A 		0.5
(-3)
A 		0
B 1.7
(3)
A 		1
(-1.7)
A 		0.8
(-3)
A 		0.9
(-2.3)
A 		1
C 0.8
(-2.8)
A 		1.4
(-2.5)
A 		0.5
(-3)
A 		12.2
(3)
A 		12
avr 1.1
(-2.4) 		1.1
(-2.4) 		0.7
(-3) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-1.3)
A 		1.8
(3)
A 		0.4
(-3)
A 		1.2
(0.4)
A 		1.5
(1.7)
A 		1.3
(0.9)
A 		1
B 0.9
(-0.7)
A 		0.7
(-1.6)
A 		1
(-0.2)
A 		0.5
(-2.5)
A 		1.7
(3)
A 		0.4
(-3)
A 		1
C 1.4
(-1.5)
A 		1.8
(-1)
A 		0.9
(-2.3)
A 		1
(-2.1)
A 		0.4
(-3)
A 		4.5
(3)
A 		4
avr 1
(-2.1) 		1.4
(-0.2) 		0.8
(-3) 		0.9
(-2.5) 		1.2
(-1.2) 		2.1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12898
Sequence Type Exemplar sequence
Representative Public ID R08A2.2 NCBI
Target Description R08A2.2 /REP_DB=WormBase Gene ID /WP=CE23903 /TR=Q9U395 /GB=CAB57902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068162, NM_074231
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074231 NCBI Caenorhabditis elegans R08A2.2 (R08A2.2) mRNA, complete cds. A 
SNAP00000001286 ENSEMBL cdna:SNAP chromosome:CEL140:V:14716835:14718262:-1 None
GENEFINDER00000031369 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4432677:4434493:-1 None
SNAP00000031356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4433079:4434493:-1 None
GENEFINDER00000001294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14716835:14718268:-1 None
NM_068162 NCBI Caenorhabditis elegans R08C7.8 (R08C7.8) mRNA, complete cds. None
R08A2.2 ENSEMBL cdna:known chromosome:CEL140:V:14716835:14718279:-1 gene:R08A2.2 A B 
R08C7.8 ENSEMBL cdna:known chromosome:CEL140:IV:4433079:4434534:-1 gene:R08C7.8 None
GENEFINDER00000001294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14716835:14718268:-1 None
R08C7.8 ENSEMBL cdna:known chromosome:CEL140:IV:4433079:4434534:-1 gene:R08C7.8 None
SNAP00000001286 ENSEMBL cdna:SNAP chromosome:CEL140:V:14716835:14718262:-1 None
NM_074231 NCBI Caenorhabditis elegans R08A2.2 (R08A2.2) mRNA, complete cds. A 
SNAP00000031356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4433079:4434493:-1 None
R08A2.2 ENSEMBL cdna:known chromosome:CEL140:V:14716835:14718279:-1 gene:R08A2.2 A B 
NM_068162 NCBI Caenorhabditis elegans R08C7.8 (R08C7.8) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4433084-4434496(-) 95.09 95.09
chrV:14716834-14718268(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
serine/threonine protein phosphatase
Ensembl R08C7.8
R08A2.2
Entrez Gene 177208 Entrez gene
187692 Entrez gene
SwissProt Q9U395 EMBL-EBI
Q21840 EMBL-EBI
WormBase CE35901 Wormbase
CE07431 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57902 Hypothetical protein R08A2.2 [Caenorhabditis elegans] ref|NP_506632.2| R08A2.2 [Caenorhabditis elegans] 0.0
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-180
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Sequence
Target Sequence 
>C. ELEGANS:192693_AT
acaaggtatcacaatgcctactatttacattgacaatttgtacttttcagcaacgcgcaa
tttctgtagttttcggtgaaaaaggattggatgttttcttgaaaaagcttggcctctcgt
tgattgtcagagctcacgaagtgtctcaggaaggattcaacttcttgttcaacaaaaaat
gtgtcacagtattctctgcaccatattattgtgggaatgataccaattgtggagcaatta
tgcacgtctcggaatcttacgagatatccttcacagttctccgtccacgaatgattgcaa
cacctgaaaatattgaaattgtaaagctgatggagaacaactacaaagggctgagggttg
cgagtccagatccaaaccgtggtcgtcatttgcaatctgctgatgttcccaagccaacag
caccgtcagtgcaactcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGGTATCACAATGCCTACTATT 407 111 695 Antisense
ATGCCTACTATTTACATTGACAATT 332 41 708 Antisense
GACAATTTGTACTTTTCAGCAACGC 31 365 726 Antisense
TCAGCAACGCGCAATTTCTGTAGTT 680 621 741 Antisense
ATGTGTCACAGTATTCTCTGCACCA 563 49 873 Antisense
CAGTATTCTCTGCACCATATTATTG 430 207 881 Antisense
GGAATCTTACGAGATATCCTTCACA 120 533 945 Antisense
CAAAGGGCTGAGGGTTGCGAGTCCA 44 189 1038 Antisense
GCTGAGGGTTGCGAGTCCAGATCCA 201 297 1044 Antisense
CCAAGCCAACAGCACCGTCAGTGCA 148 275 1103 Antisense
AACAGCACCGTCAGTGCAACTCGTT 485 135 1110 Antisense
Sequence Source Affymetrix Proprietary Database