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[192692_s_at] yeast hyothetical YET1 like protein

Description F54D5.12 /REP_DB=WormBase Gene ID /WP=CE26814 /TR=Q20777 /GB=CAA91337.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=yeast hyothetical YET1 like protein
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 689.7
(3)
P 		438.8
(-1.4)
P 		607.6
(1.6)
P 		344.5
(-3)
P 		345
B 678.2
(2.6)
P 		460.3
(-1.2)
P 		703.2
(3)
P 		355.7
(-3)
P 		348
C 541
(1.6)
P 		346.5
(-1.8)
P 		623.9
(3)
P 		274
(-3)
P 		350
avr 636.3
(2.8) 		415.2
(-1.3) 		644.9
(3) 		324.7
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 347.5
(-3)
P 		470.2
(-1.7)
P 		446.7
(-2)
P 		641.6
(0.1)
P 		649
(0.2)
P 		915.4
(3)
P 		568
B 413.8
(-2.1)
P 		335.9
(-3)
P 		455.2
(-1.6)
P 		515.1
(-1)
P 		645.9
(0.5)
P 		863.9
(3)
P 		528
C 338.8
(-3)
P 		446.3
(-2.1)
P 		638.6
(-0.4)
P 		541.8
(-1.3)
P 		633.4
(-0.5)
P 		1036.7
(3)
P 		698
avr 366.7
(-3) 		417.5
(-2.5) 		513.5
(-1.5) 		566.2
(-0.9) 		642.8
(-0.1) 		938.7
(3) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 251.1
(3)
P 		95.2
(-1.7)
P 		158.8
(0.2)
P 		50.4
(-3)
P 		201
B 216.3
(3)
P 		113.7
(-1.4)
P 		162.9
(0.7)
P 		75.8
(-3)
P 		141
C 179.1
(1.7)
P 		99.6
(-1.1)
P 		217.5
(3)
P 		46.2
(-3)
P 		171
avr 215.5
(3) 		102.8
(-1.3) 		179.7
(1.6) 		57.5
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 64.1
(-3)
P 		167.2
(0.9)
P 		97.3
(-1.7)
P 		162.7
(0.7)
P 		195.8
(2)
P 		222.9
(3)
P 		159
B 144
(-2.1)
P 		111.8
(-3)
P 		110.5
(-3)
P 		136.4
(-2.3)
P 		262.4
(1.3)
P 		322.2
(3)
P 		212
C 125.6
(-2.6)
P 		136.2
(-2.3)
P 		162.5
(-1.7)
P 		109
(-3)
P 		205
(-0.6)
P 		347
(3)
P 		238
avr 111.2
(-3) 		138.4
(-2.1) 		123.4
(-2.6) 		136
(-2.2) 		221.1
(0.5) 		297.4
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192692_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2903
Sequence Type Exemplar sequence
Representative Public ID F54D5.12 NCBI
Target Description F54D5.12 /REP_DB=WormBase Gene ID /WP=CE26814 /TR=Q20777 /GB=CAA91337.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=yeast hyothetical YET1 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064064 NCBI Caenorhabditis elegans F54D5.12 (F54D5.12) mRNA, complete cds. 11/11 None
F54D5.12.2 ENSEMBL cdna:known chromosome:CEL140:II:11538811:11551985:-1 gene:F54D5.12 11/11 None
F54D5.12.1 ENSEMBL cdna:known chromosome:CEL140:II:11538811:11540535:-1 gene:F54D5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11538877-11540442(-) 100.0 100.0
Public Domain and Genome References
Gene Title yeast hyothetical YET1 like protein
Ensembl F54D5.12
Entrez Gene 174764 Entrez gene
SwissProt Q20777 EMBL-EBI
WormBase CE26814 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14442_AT FAD linked oxidase family protein at
ATH1-121501:246162_AT FAD linked oxidase family protein at
CANINE_2:CFAAFFX.20376.1.S1_S_AT similar to CG3835-PA, isoform A cfa
CANINE_2:CFAAFFX.20385.1.S1_AT similar to CG3835-PA, isoform A cfa
CANINE_2:CFAAFFX.20386.1.S1_AT similar to CG3835-PA, isoform A cfa
DROSOPHILA_2:1637491_S_AT dm
DROSGENOME1:152717_AT dm
CHICKEN:GGA.13100.1.S1_S_AT similar to AI325464 protein gga
HU35KSUBA:RC_AA478726_AT hypothetical protein MGC25181 hs
U133_X3P:HS.26373.0.S1_3P_AT hypothetical protein MGC25181 hs
HG-U133_PLUS_2:228738_AT hypothetical protein MGC25181 hs
HG-U133B:228738_AT hypothetical protein MGC25181 hs
HG-U95B:50086_AT hypothetical protein MGC25181 hs
HG-U95C:63729_F_AT hypothetical protein MGC25181 hs
U133_X3P:HS2.334770.1.S1_3P_X_AT Hypothetical protein MGC25181 hs
U133_X3P:1570338_3P_AT Hypothetical protein MGC25181 hs
HG-U133_PLUS_2:1570338_AT Hypothetical protein MGC25181 hs
HG-U133_PLUS_2:1570339_X_AT Hypothetical protein MGC25181 hs
MU11KSUBB:MSA.33361.0_S_AT expressed sequence AI325464 mm
MOE430A:1437243_AT expressed sequence AI325464 mm
MOUSE430A_2:1437243_AT expressed sequence AI325464 mm
MOUSE430_2:1437243_AT expressed sequence AI325464 mm
MOE430B:1437840_S_AT Expressed sequence AI325464, mRNA (cDNA clone MGC:30834 IMAGE:4006813) mm
MOUSE430_2:1437840_S_AT Expressed sequence AI325464, mRNA (cDNA clone MGC:30834 IMAGE:4006813) mm
MG-U74AV2:99966_AT Expressed sequence AI325464, mRNA (cDNA clone MGC:30834 IMAGE:4006813) mm
MU11KSUBA:AA119680_S_AT Expressed sequence AI325464, mRNA (cDNA clone MGC:30834 IMAGE:4006813) mm
RAE230B:1382047_AT similar to AI325464 protein (predicted) rn
RAT230_2:1382047_AT similar to AI325464 protein (predicted) rn
RG-U34B:RC_AA899888_AT Similar to AI325464 protein (predicted) rn
YEAST_2:1775814_AT D-lactate dehydrogenase, located in the mitochondrial matrix Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91337 Hypothetical protein F54D5.12 [Caenorhabditis elegans] emb|CAB57915.2| Hypothetical protein F54D5.12 [Caenorhabditis elegans] ref|NP_496465.1| F54D5.12 [Caenorhabditis elegans] 0.0
blast CAE59481 Hypothetical protein CBG02865 [Caenorhabditis briggsae] 0.0
blast NP_974692 FAD linked oxidase family protein [Arabidopsis thaliana] ref|NP_568003.2| FAD linked oxidase family protein [Arabidopsis thaliana] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 8.7E-55
Pfam IPR004113 EMBL-EBI FAD linked oxidase, C-terminal 7.1E-90
Sequence
Target Sequence 
>C. ELEGANS:192692_S_AT
tcgaacttctcgacgatgctacgatggaatgtttgaaaacgaatctaggattgcacccag
tactgaatgctccaaccccattctcgatccttgtcgaaacatcaggatccaatgaagatc
acgatatggagaaaatgagcgcatttttggatgaatgcctctcaaaaaatctgattatcg
acggagtgctcgctggatcttctgcagaagctacgaagatgtggcaattgagagaaagtg
caccattggcggttaccagagatggatatgtctataagcatgatgtttctttaccattgg
aaaattattatgaattgacgaatgtgatgaaggaacgatgtggttctttggctaaaagaa
ttgtcacttatggacatttgggagatggaaacactcatttaaatattacatctgaaaaac
acaatgaagaacttgaaaaattgctctatcccttcctctacgaatgggttgtcgatcacg
gcgggtcaatttcagctgaacatggaatcggtcaactgaagctaccgtactccacattcg
gaaaagatcctgaagaacgacttttgacaaagaagctcaagaacattttcgaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAACTTCTCGACGATGCTACGAT 277 601 758 Antisense
CGAATCTAGGATTGCACCCAGTACT 393 251 797 Antisense
TGCACCCAGTACTGAATGCTCCAAC 105 577 809 Antisense
CCCATTCTCGATCCTTGTCGAAACA 446 259 834 Antisense
GATTATCGACGGAGTGCTCGCTGGA 548 429 930 Antisense
TGCTCGCTGGATCTTCTGCAGAAGC 363 581 944 Antisense
GAAAGTGCACCATTGGCGGTTACCA 106 361 991 Antisense
TCTATCCCTTCCTCTACGAATGGGT 261 607 1202 Antisense
ACGAATGGGTTGTCGATCACGGCGG 521 91 1217 Antisense
ATCACGGCGGGTCAATTTCAGCTGA 62 27 1232 Antisense
GAAGCTCAAGAACATTTTCGACCCA 30 343 1329 Antisense
Sequence Source Affymetrix Proprietary Database