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[192690_s_at] initiation factor associated protein /// methionine aminopeptidase 2

Description F53B6.5 /REP_DB=WormBase Gene ID /WP=CE10898 /TR=P90883 /GB=CAB03119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=initiation factor associated protein
Cluster 6grp_total > 93      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 4.1
(-2.9)
A 		3.9
(-2.9)
A 		2.6
(-3)
A 		77.2
(3)
A 		75
B 38.6
(3)
A 		5.6
(-3)
A 		6.5
(-2.8)
A 		6
(-2.9)
A 		33
C 41
(1)
A 		3
(-2.8)
A 		1.1
(-3)
A 		61.3
(3)
A 		60
avr 27.9
(0.3) 		4.2
(-2.9) 		3.4
(-3) 		48.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.2
(-2.4)
A 		3
(-2.6)
A 		7.1
(-1.8)
A 		1.2
(-3)
A 		30.8
(3)
A 		10.1
(-1.2)
A 		30
B 2.7
(-3)
A 		10.2
(0.6)
A 		5.6
(-1.6)
A 		15.2
(3)
A 		15
(2.9)
A 		2.6
(-3)
A 		13
C 6.4
(0)
A 		7.1
(0.5)
A 		2.4
(-3)
A 		3.5
(-2.2)
A 		3.1
(-2.5)
A 		10.4
(3)
A 		8
avr 4.4
(-3) 		6.8
(-1.8) 		5
(-2.7) 		6.6
(-1.9) 		16.3
(3) 		7.7
(-1.3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.5
(-2.5)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		11.3
(3)
A 		11
B 12.3
(3)
A 		1.4
(-2.9)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		11
C 13.6
(3)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		10.3
(1.5)
A 		13
avr 9.1
(3) 		1.1
(-2.9) 		0.9
(-3) 		7.6
(1.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		1.1
(-2.5)
A 		1.5
(-2.2)
A 		0.3
(-3)
A 		9.3
(3)
A 		2.5
(-1.5)
A 		9
B 0.9
(-3)
A 		3.4
(-0.1)
A 		1.4
(-2.4)
A 		4
(0.6)
A 		6.1
(3)
A 		1
(-2.9)
A 		5
C 2.4
(0.7)
A 		2.2
(0.3)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		1
(-2.2)
A 		3.5
(3)
A 		3
avr 1.4
(-2.7) 		2.2
(-1.6) 		1.2
(-3) 		1.7
(-2.3) 		5.5
(3) 		2.3
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192690_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1786
Sequence Type Exemplar sequence
Representative Public ID F53B6.5 NCBI
Target Description F53B6.5 /REP_DB=WormBase Gene ID /WP=CE10898 /TR=P90883 /GB=CAB03119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=initiation factor associated protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078226(11), NM_060007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078226 NCBI Caenorhabditis elegans T27A8.3 (T27A8.3) mRNA, complete cds. 11/11 None
NM_060007 NCBI Caenorhabditis elegans F53B6.5 (F53B6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000012073 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8956943:8959177:1 11/11 None
SNAP00000012068 ENSEMBL cdna:SNAP chromosome:CEL140:I:8958536:8959177:1 11/11 None
SNAP00000006725 ENSEMBL cdna:SNAP chromosome:CEL140:X:16062563:16063204:1 11/11 None
GENEFINDER00000006728 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16062599:16063204:1 11/11 None
F53B6.5 ENSEMBL cdna:known chromosome:CEL140:I:8958572:8959177:1 gene:F53B6.5 11/11 None
T27A8.3 ENSEMBL cdna:known chromosome:CEL140:X:16062599:16063204:1 gene:T27A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16062598-16063204(+) 99.17 99.17
chrI:8958502-8959108(+) 100.0 100.0
Public Domain and Genome References
Gene Title initiation factor associated protein
methionine aminopeptidase 2
Ensembl F53B6.5
T27A8.3
Entrez Gene 188968 Entrez gene
353384 Entrez gene
SwissProt P90883 EMBL-EBI
P50581 EMBL-EBI
WormBase CE34486 Wormbase
CE03743 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92223 Hypothetical protein T27A8.3 [Caenorhabditis elegans] ref|NP_510627.1| T27A8.3 [Caenorhabditis elegans] sp|P50581|YD43_CAEEL Hypothetical protein T27A8.3 in chromosome X 1.0E-102
blast CAB03119 Hypothetical protein F53B6.5 [Caenorhabditis elegans] ref|NP_492408.2| F53B6.5 [Caenorhabditis elegans] 1.0E-102
blast CAB03119 Hypothetical protein F53B6.5 [Caenorhabditis elegans] ref|NP_492408.2| F53B6.5 [Caenorhabditis elegans] 1.0E-100
blast CAA92223 Hypothetical protein T27A8.3 [Caenorhabditis elegans] ref|NP_510627.1| T27A8.3 [Caenorhabditis elegans] sp|P50581|YD43_CAEEL Hypothetical protein T27A8.3 in chromosome X 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000994 EMBL-EBI Peptidase M24 2.0E-11
Pfam IPR000994 EMBL-EBI Peptidase M24 1.7E-11
Pfam IPR000994 EMBL-EBI Peptidase M24 1.7E-11
Pfam IPR000994 EMBL-EBI Peptidase M24 1.7E-11
Pfam IPR000994 EMBL-EBI Peptidase M24 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:192690_S_AT
gattctctccgatcaaaactttttacagacccaatggaaagagccacagacggcacaatc
aaagaatacggaatcgaaatgcgaattccatggaaactcgaatgaggtgaagccgattgg
cagtctcaacggacagtcgatcgctcaatgccgtattcacactgaaaagacggttccaat
tgtgaagggcggtgaacaggcgaggatggaggagaacgagatctacgcgattgagacgtt
cggatctacgggaaaaggatattttcatgatgatatggaaacatcgcattatatgaagaa
ttttgagctcgccgacgagaaaattccacttcgcttgcaaaaatcgaagggtcttctcaa
cttgatcgacaagaatttcgccacgctggctttctgccgttgttggattgatcggcttgg
agagaccaagtacttgatggctctcaaaggtaagtgttcctactctactgcttctagatt
gatgctaatattaactctatttacagaccgctggatggctatggttggagcttgtatact
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCTCCGATCAAAACTTTTTA 207 431 15 Antisense
TCAAAACTTTTTACAGACCCAATGG 224 627 27 Antisense
GAAAGAGCCACAGACGGCACAATCA 109 361 51 Antisense
CGAATGAGGTGAAGCCGATTGGCAG 626 251 113 Antisense
GTGAAGGGCGGTGAACAGGCGAGGA 357 475 196 Antisense
GAGATCTACGCGATTGAGACGTTCG 313 397 232 Antisense
ACGCGATTGAGACGTTCGGATCTAC 232 91 239 Antisense
TCGACAAGAATTTCGCCACGCTGGC 383 599 380 Antisense
TGGCTTTCTGCCGTTGTTGGATTGA 281 545 401 Antisense
AGACCGCTGGATGGCTATGGTTGGA 201 69 519 Antisense
GCTATGGTTGGAGCTTGTATACTAC 146 301 532 Antisense
Sequence Source Affymetrix Proprietary Database