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[192684_s_at]

Description F23C8.5 /REP_DB=WormBase Gene ID /WP=CE20714 /TR=Q9TXI4 /GB=AAD03129.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=electron transfer flavoprotein beta
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 919
1 2 3 4 range
A 729.4
(0.4)
P 		1098.9
(3)
P 		1102.5
(3)
P 		232
(-3)
P 		871
B 739.6
(1)
P 		954
(2.5)
P 		1018.3
(3)
P 		186.5
(-3)
P 		832
C 836.6
(1.4)
P 		1083.8
(3)
P 		979
(2.3)
P 		183.8
(-3)
P 		900
avr 768.5
(1) 		1045.6
(3) 		1033.3
(2.9) 		200.8
(-3) 		845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1111
1 2 3 4 5 6 range
A 966.9
(-0.1)
P 		917.2
(-0.4)
P 		1542.7
(3)
P 		947.8
(-0.2)
P 		599.2
(-2.1)
P 		435.8
(-3)
P 		1107
B 926.2
(0.1)
P 		892.4
(-0.2)
P 		1248.4
(3)
P 		1125
(1.9)
P 		788.2
(-1.1)
P 		580.6
(-3)
P 		668
C 1161
(2.8)
P 		918.9
(0.9)
P 		1181.6
(3)
P 		811.3
(0)
P 		861.2
(0.4)
P 		431.5
(-3)
P 		750
avr 1018
(0.8) 		909.5
(0) 		1324.2
(3) 		961.4
(0.4) 		749.5
(-1.1) 		482.6
(-3) 		842
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 265.6
(2.5)
P 		238.5
(1.8)
P 		288.2
(3)
P 		34
(-3)
P 		254
B 235.8
(3)
P 		235.6
(3)
P 		236
(3)
P 		39.7
(-3)
P 		196
C 276.9
(1.8)
P 		311.6
(2.4)
P 		341.2
(3)
P 		31
(-3)
P 		310
avr 259.4
(2.3) 		261.9
(2.4) 		288.5
(3) 		34.9
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 178.2
(-1.1)
P 		326.2
(2.7)
P 		336
(3)
P 		240.4
(0.5)
P 		180.8
(-1.1)
P 		106.1
(-3)
P 		230
B 322.3
(3)
P 		297.1
(1.6)
P 		303.1
(1.9)
P 		298
(1.6)
P 		320.2
(2.9)
P 		216.5
(-3)
P 		106
C 430.3
(3)
P 		280.4
(-0.1)
P 		300.7
(0.3)
P 		163.2
(-2.6)
P 		278.7
(-0.2)
P 		144.5
(-3)
P 		286
avr 310.3
(2.9) 		301.2
(2.5) 		313.3
(3) 		233.9
(-0) 		259.9
(1) 		155.7
(-3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.48
Sequence Type Exemplar sequence
Representative Public ID F23C8.5 NCBI
Target Description F23C8.5 /REP_DB=WormBase Gene ID /WP=CE20714 /TR=Q9TXI4 /GB=AAD03129.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=electron transfer flavoprotein beta
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058572
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2418598:2421698:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058572 8/11 Cross Hyb Matching Probes None
SNAP00000018133 8/11 Cross Hyb Matching Probes None
F23C8.5.3 8/11 Cross Hyb Matching Probes None
F23C8.5.1 8/11 Cross Hyb Matching Probes None
F23C8.5.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2418597-2420347(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD03129 Hypothetical protein F23C8.5 [Caenorhabditis elegans] ref|NP_490973.2| F23C8.5 [Caenorhabditis elegans] 1.0E-120
blast CAE60382 Hypothetical protein CBG03983 [Caenorhabditis briggsae] 1.0E-113
blast AAD03134 Hypothetical protein F23C8.6 [Caenorhabditis elegans] ref|NP_490974.1| F23C8.6 [Caenorhabditis elegans] 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 2.0E-52
Pfam IPR000049 EMBL-EBI Electron transfer flavoprotein beta-subunit 1.4E-68
Pfam IPR000049 EMBL-EBI Electron transfer flavoprotein beta-subunit 1.2E-18
Sequence
Target Sequence 
>C. ELEGANS:192684_S_AT
agctggcaagctcgagtcattccacgtggcgaaggcgcttcagaagattgtcgagcagga
gaagttcgacgcggtttttctcggaaagcaggcaatcgatgatgattcgtcgcaaactgc
tccgattctcgctggcctgctcgagtggccacaggctctctacgcgtcgaaggttgaaga
cgcaggcgctggacacatgaaggtcacccgtgaaattgatggaggtcttgacacgattaa
ggtgattcttactatatcgatcgatagccgtgaaaagcagccccgcacagaacgcgagac
ggggcttgatattgcaaccctgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGGCAAGCTCGAGTCATTCCAC 406 81 288 Antisense
TCATTCCACGTGGCGAAGGCGCTTC 197 619 304 Antisense
GAGCAGGAGAAGTTCGACGCGGTTT 701 387 340 Antisense
GACGCGGTTTTTCTCGGAAAGCAGG 102 341 355 Antisense
TGATGATTCGTCGCAAACTGCTCCG 371 567 387 Antisense
GCTCTCTACGCGTCGAAGGTTGAAG 340 299 442 Antisense
GGTTGAAGACGCAGGCGCTGGACAC 682 505 459 Antisense
GCTGGACACATGAAGGTCACCCGTG 317 295 475 Antisense
TCGATAGCCGTGAAAAGCAGCCCCG 474 601 548 Antisense
GCACAGAACGCGAGACGGGGCTTGA 261 317 572 Antisense
GGGGCTTGATATTGCAACCCTGCGG 50 499 588 Antisense
Sequence Source Affymetrix Proprietary Database