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[192683_at]

Description K03H9.2_rc /REP_DB=WormBase Gene ID /WP=CE01996 /TR=SW:Q09578 /GB=AAC46668.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=collagen alpha chain
Cluster 6grp_total > 02      4grp_total > 44      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.1
(-3)
A 		31.2
(3)
A 		12.4
(-1.3)
A 		20.5
(0.5)
A 		26
B 6.6
(-3)
A 		13.3
(3)
A 		12.4
(2.2)
A 		6.8
(-2.8)
A 		7
C 35.7
(3)
A 		8.6
(-2.7)
A 		7
(-3)
A 		7.3
(-2.9)
A 		29
avr 15.8
(1.4) 		17.7
(3) 		10.6
(-3) 		11.5
(-2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.1
(2.1)
A 		13.4
(3)
A 		11.2
(1.5)
A 		5.7
(-2.4)
A 		7.3
(-1.3)
A 		4.8
(-3)
A 		9
B 15.1
(0.3)
A 		23
(3)
A 		5.5
(-3)
A 		8
(-2.1)
A 		11.9
(-0.8)
A 		6.2
(-2.8)
A 		18
C 8.1
(-0.6)
A 		16.1
(3)
A 		2.8
(-3)
A 		9.9
(0.2)
A 		6.9
(-1.2)
A 		6.3
(-1.4)
A 		13
avr 11.8
(0.1) 		17.5
(3) 		6.5
(-2.6) 		7.9
(-1.9) 		8.7
(-1.5) 		5.8
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.9
(-3)
A 		6.8
(3)
A 		3.2
(-1.4)
A 		3
(-1.7)
A 		5
B 2.1
(-1)
A 		3.3
(3)
A 		2.9
(1.7)
A 		1.5
(-3)
A 		2
C 11.8
(3)
A 		2.5
(-2.3)
A 		2.4
(-2.3)
A 		1.2
(-3)
A 		11
avr 5.3
(3) 		4.2
(1.1) 		2.8
(-1.4) 		1.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.2
(-1.3)
A 		4.8
(3)
A 		2.4
(-1)
A 		1.5
(-2.5)
A 		2.2
(-1.3)
A 		1.2
(-3)
A 		4
B 5.2
(0.7)
A 		7.6
(3)
A 		1.3
(-3)
A 		2.1
(-2.2)
A 		4.8
(0.3)
A 		2.3
(-2)
A 		6
C 3
(0.3)
A 		4.9
(3)
A 		0.7
(-3)
A 		2
(-1.1)
A 		2.2
(-0.9)
A 		2.1
(-1)
A 		4
avr 3.5
(-0.2) 		5.8
(3) 		1.5
(-3) 		1.9
(-2.4) 		3.1
(-0.8) 		1.9
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28118
Sequence Type Exemplar sequence
Representative Public ID K03H9.2 NCBI
Target Description K03H9.2_rc /REP_DB=WormBase Gene ID /WP=CE01996 /TR=SW:Q09578 /GB=AAC46668.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=collagen alpha chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K03H9.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K03H9.2 K03H9.2_rc /REP_DB=WormBase Gene ID /WP=CE01996 /TR=SW:Q09578 /GB=AAC46668.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=collagen alpha chain A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062893 11/11 Negative Strand Matching Probes A 
SNAP00000017294 11/11 Negative Strand Matching Probes None
GENEFINDER00000017298 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6426236-6427367(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03H9.2
Sequence
Target Sequence 
>C. ELEGANS:192683_AT
gactcctttgattccagttatgccaatgctaccaggtaatcccgcaaatcctgggagacc
aggtgaccctggttcaccaggtgctccatccagacctgttgatcctcgttctccattcat
tccgcgaacaccaggttctccaggccaaccgggaatacccggaggaccatcgattccctt
atatccagattttccttttggtccataaggacagattcggcatccaaaaacttgctgata
taaaatatttggaagttctccgggtattccgggagatccaggcattccaggaaggccatc
tttgcctggttgtccatcaggtcctgtaattccaatccgtccaggcgggcatgtatttat
gtattcacattcacaataactatatacatgtttcttctgccttctttcatagtttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCTTTGATTCCAGTTATGCCA 443 375 271 Antisense
TGCTACCAGGTAATCCCGCAAATCC 269 577 297 Antisense
GTGACCCTGGTTCACCAGGTGCTCC 445 483 333 Antisense
GAATACCCGGAGGACCATCGATTCC 182 315 423 Antisense
GATTCCCTTATATCCAGATTTTCCT 325 431 442 Antisense
GTATTCCGGGAGATCCAGGCATTCC 577 449 534 Antisense
GGCATTCCAGGAAGGCCATCTTTGC 246 537 551 Antisense
TTTGCCTGGTTGTCCATCAGGTCCT 549 667 571 Antisense
ATCAGGTCCTGTAATTCCAATCCGT 350 29 586 Antisense
CAATCCGTCCAGGCGGGCATGTATT 672 179 603 Antisense
TTCTGCCTTCTTTCATAGTTTTTCG 38 695 665 Antisense
Sequence Source Affymetrix Proprietary Database