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[192679_at] Ribosomal protein ML16

Description R151.3 /REP_DB=WormBase Gene ID /WP=CE00744 /GEN=rpl-6 /TR=SW:P47991 /GB=AAK29850.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein ML16
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 30      4grp_total > 17      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16202
1 2 3 4 range
A 23959.7
(-3)
P 		32351.3
(0.6)
P 		28665.7
(-1)
P 		37856.6
(3)
P 		13897
B 25865.7
(-1.2)
P 		24186.6
(-3)
P 		26268.1
(-0.8)
P 		29907.3
(3)
P 		5721
C 21654.8
(-3)
P 		23723.5
(-2)
P 		23712.1
(-2)
P 		34264.7
(3)
P 		12610
avr 23826.7
(-3) 		26753.8
(-1.3) 		26215.3
(-1.6) 		34009.5
(3) 		10183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6311
1 2 3 4 5 6 range
A 21921
(2)
P 		21544.1
(1.5)
P 		22721.2
(3)
P 		21339.6
(1.2)
P 		18030.3
(-3)
P 		21763.9
(1.8)
P 		4691
B 16661.5
(-2.9)
P 		21754.8
(3)
P 		19842.7
(0.8)
P 		18758.8
(-0.5)
P 		17839
(-1.5)
P 		16554.2
(-3)
P 		5201
C 20023.5
(-0.7)
P 		21930.7
(1.8)
P 		22864.9
(3)
P 		21017.9
(0.6)
P 		20428.9
(-0.2)
P 		18244.1
(-3)
P 		4621
avr 19535.3
(-1.5) 		21743.2
(2.9) 		21809.6
(3) 		20372.1
(0.2) 		18766.1
(-3) 		18854.1
(-2.8) 		3044
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3182
1 2 3 4 range
A 8723.7
(3)
P 		7022.6
(-0.2)
P 		7493.8
(0.7)
P 		5541.5
(-3)
P 		3182
B 8248.4
(3)
P 		5973.5
(-3)
P 		6086.9
(-2.7)
P 		6373.3
(-1.9)
P 		2275
C 7168.4
(0.4)
P 		6820.6
(-0.5)
P 		8264.4
(3)
P 		5777.6
(-3)
P 		2487
avr 8046.8
(3) 		6605.6
(-1) 		7281.7
(0.9) 		5897.5
(-3) 		2149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3621
1 2 3 4 5 6 range
A 4041
(-3)
P 		7662.2
(3)
P 		4948.2
(-1.5)
P 		5412.2
(-0.7)
P 		5440.8
(-0.7)
P 		5298.8
(-0.9)
P 		3621
B 5797.4
(-0.6)
P 		7241.3
(3)
P 		4818.4
(-3)
P 		4968.6
(-2.6)
P 		7247.8
(3)
P 		6173
(0.3)
P 		2429
C 7421.8
(3)
P 		6691.7
(1.6)
P 		5819.5
(-0)
P 		4226.7
(-3)
P 		6610.5
(1.5)
P 		6107.3
(0.5)
P 		3195
avr 5753.4
(-0.7) 		7198.4
(3) 		5195.4
(-2.2) 		4869.2
(-3) 		6433
(1) 		5859.7
(-0.4) 		2329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6289
Sequence Type Exemplar sequence
Representative Public ID R151.3 NCBI
Target Description R151.3 /REP_DB=WormBase Gene ID /WP=CE00744 /GEN=rpl-6 /TR=SW:P47991 /GB=AAK29850.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein ML16
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066183 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-6) (rpl-6) mRNA, complete cds. 11/11 None
SNAP00000037933 ENSEMBL cdna:SNAP chromosome:CEL140:III:7208379:7209679:1 11/11 None
GENEFINDER00000037948 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7208379:7209679:1 11/11 None
R151.3.2 ENSEMBL cdna:known chromosome:CEL140:III:7208356:7209786:1 gene:R151.3 11/11 None
R151.3.1 ENSEMBL cdna:known chromosome:CEL140:III:7208371:7209786:1 gene:R151.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7208376-7209677(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein ML16
Gene Symbol rpl-6
Ensembl R151.3
Entrez Gene 176015 Entrez gene
SwissProt P47991 EMBL-EBI
WormBase CE00744 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255776_AT 60S ribosomal protein L6 (RPL6A) at
CANINE:1583121_X_AT Ribosomal protein L6 cfa
CANINE:1583120_S_AT Ribosomal protein L6 cfa
CANINE:1597813_X_AT Ribosomal protein L6 cfa
CANINE:1597707_X_AT Ribosomal protein L6 cfa
CANINE:1584757_AT Ribosomal protein L6 cfa
CANINE_2:CFA.1309.2.A1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFA.1309.5.A1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.3711.1.S1_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.3711.1.S1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.439.1.S1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.440.1.S1_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.441.1.S1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.447.1.S1_X_AT Ribosomal protein L6 cfa
CANINE_2:CFAAFFX.448.1.S1_X_AT Ribosomal protein L6 cfa
CANINE:1583120_S_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE:1597707_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE:1584757_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.3711.1.S1_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.3711.1.S1_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.439.1.S1_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.440.1.S1_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.441.1.S1_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.447.1.S1_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
CANINE_2:CFAAFFX.448.1.S1_X_AT similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) cfa
DROSOPHILA_2:1641355_A_AT Ribosomal protein L6 dm
DROSGENOME1:150949_AT Ribosomal protein L6 dm
CHICKEN:GGA.3486.1.S1_AT ribosomal protein L6 gga
HG-U133B:200034_S_AT ribosomal protein L6 hs
PLASMODIUM_ANOPHELES:200034_S_AT ribosomal protein L6 hs
HG-U133_PLUS_2:200034_S_AT ribosomal protein L6 hs
HG-U133A:200034_S_AT ribosomal protein L6 hs
HG-FOCUS:200034_S_AT ribosomal protein L6 hs
HG-U133A_2:200034_S_AT ribosomal protein L6 hs
U133_X3P:200034_S_AT ribosomal protein L6 hs
HG-U95AV2:31952_AT ribosomal protein L6 hs
HU35KSUBD:RC_H49617_R_AT ribosomal protein L6 hs
HU35KSUBD:RC_H49617_S_AT ribosomal protein L6 hs
HUGENEFL:X69391_AT ribosomal protein L6 hs
U133_X3P:G4506656_3P_A_AT ribosomal protein L6 hs
MG-U74AV2:96962_AT ribosomal protein L6 mm
MOE430A:1416546_A_AT ribosomal protein L6 mm
MOUSE430_2:1416546_A_AT ribosomal protein L6 mm
MOUSE430A_2:1416546_A_AT ribosomal protein L6 mm
MU11KSUBB:X81987_F_AT ribosomal protein L6 mm
MU11KSUBB:MSA.28808.0_F_AT ribosomal protein L6 mm
MU11KSUBB:MSA.28525.0_F_AT ribosomal protein L6 mm
MU11KSUBB:MSA.2713.0_F_AT ribosomal protein L6 mm
MU11KSUBB:MSA.23709.0_F_AT ribosomal protein L6 mm
MU11KSUBB:MSA.28525.0_F_AT similar to ribosomal protein L6 mm
MU11KSUBB:MSA.23709.0_F_AT similar to ribosomal protein L6 mm
MU19KSUBA:TC14615_AT Ribosomal protein L6 (Rpl6), mRNA mm
MU19KSUBA:TC14617_AT Ribosomal protein L6 (Rpl6), mRNA mm
MU19KSUBA:TC14619_F_AT Ribosomal protein L6 (Rpl6), mRNA mm
MU19KSUBB:TC32413_AT Ribosomal protein L6 (Rpl6), mRNA mm
MU19KSUBB:TC33483_F_AT Ribosomal protein L6 (Rpl6), mRNA mm
RG-U34A:RC_AA799672_S_AT ribosomal protein L6 rn
RG-U34A:S71021_S_AT ribosomal protein L6 rn
RG-U34B:RC_AA943217_F_AT ribosomal protein L6 rn
RAE230A:1367567_AT ribosomal protein L6 rn
RAT230_2:1367567_AT ribosomal protein L6 rn
RG-U34A:RC_AA799672_S_AT similar to 60S ribosomal protein L6 (Neoplasm-related protein C140) rn
RG-U34B:RC_AA943217_F_AT similar to 60S ribosomal protein L6 (Neoplasm-related protein C140) rn
YEAST_2:1774174_AT Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29850 Ribosomal protein, large subunit protein 6 [Caenorhabditis elegans] ref|NP_498584.1| Ribosomal Protein, Large subunit family member (rpl-6) [Caenorhabditis elegans] sp|P47991|RL6_CAEEL 60S ribosomal protein L6 1.0E-120
blast CAE70155 Hypothetical protein CBG16622 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR000915 EMBL-EBI Ribosomal protein L6E 4.5E-77
Sequence
Target Sequence 
>C. ELEGANS:192679_AT
tagcgccaagcttccaaaacttcaaagaaacggaacgaaattcgctctcggacattccaa
gactgtcactctccgcaagactctcactccaggaactgtcctcatcgttctcgctggacg
tcataagggaaagcgtgttgtcttcttgaagcagctcccacaatccggacttctccttgt
cactggaccacacaagatcaacggattcccacttcgcagaatcggacaagctttcgtgat
cgctacctcacttaaggtcaacgtctccggagtcaagatcccagagcacatcaacgacga
gtacttcaagagaaagtccaccgcacaaaagaccggaaagaacatctttgcttccggaaa
gaccgagtacaccgtctccgagcagagaaagaaggacatcaagaccgttgatgccccaat
cctcgctgccatcaagaagcacccagagcacaagttcctcttcggataccttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCGCCAAGCTTCCAAAACTTCAA 567 651 141 Antisense
TTCGCTCTCGGACATTCCAAGACTG 89 697 181 Antisense
CAAGACTCTCACTCCAGGAACTGTC 672 183 216 Antisense
CATCGTTCTCGCTGGACGTCATAAG 21 213 243 Antisense
TTGTCTTCTTGAAGCAGCTCCCACA 424 707 278 Antisense
CAAGATCAACGGATTCCCACTTCGC 215 183 333 Antisense
CGGACAAGCTTTCGTGATCGCTACC 16 243 363 Antisense
CCTCACTTAAGGTCAACGTCTCCGG 91 267 386 Antisense
GTCTCCGGAGTCAAGATCCCAGAGC 301 471 403 Antisense
AATCCTCGCTGCCATCAAGAAGCAC 668 167 558 Antisense
ACAAGTTCCTCTTCGGATACCTTGG 537 111 590 Antisense
Sequence Source Affymetrix Proprietary Database