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[192673_s_at] glucose-6-phosphate 1-dehydrogenase

Description T04A8.15 /REP_DB=WormBase Gene ID /WP=CE01069 /TR=Q22145 /GB=CAA84736.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=glucose-6-phosphate 1-dehydrogenase
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 184.7
(3)
P 		87.9
(-2.1)
P 		94.7
(-1.8)
A 		71.2
(-3)
A 		114
B 121.2
(3)
P 		104.3
(-3)
M 		109.1
(-1.3)
P 		121.2
(3)
P 		17
C 184.5
(3)
P 		108.6
(-1.8)
A 		89.4
(-3)
P 		125.6
(-0.7)
P 		95
avr 163.5
(3) 		100.3
(-2.8) 		97.7
(-3) 		106
(-2.2) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 133.5
(-2.7)
P 		164.4
(-1.2)
P 		126.9
(-3)
P 		133.5
(-2.7)
P 		130.1
(-2.8)
P 		254.2
(3)
P 		127
B 152.4
(-0.7)
P 		96.8
(-3)
P 		111.5
(-2.4)
P 		120.2
(-2)
P 		134.2
(-1.5)
P 		242.1
(3)
P 		145
C 151
(-1.2)
P 		139.4
(-1.7)
P 		191.5
(0.2)
P 		101.1
(-3)
P 		156.2
(-1.1)
P 		271.5
(3)
P 		170
avr 145.6
(-1.8) 		133.5
(-2.3) 		143.3
(-1.9) 		118.3
(-3) 		140.2
(-2) 		255.9
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 67.3
(3)
P 		19.1
(-2.1)
P 		24.8
(-1.5)
A 		10.4
(-3)
A 		57
B 38.7
(3)
P 		25.8
(-2.8)
M 		25.3
(-3)
P 		25.8
(-2.8)
P 		13
C 61.1
(3)
P 		31.2
(-1.5)
A 		31.1
(-1.5)
P 		21.2
(-3)
P 		40
avr 55.7
(3) 		25.4
(-2) 		27.1
(-1.7) 		19.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 24.6
(-3)
P 		58.5
(2.5)
P 		27.6
(-2.5)
P 		33.8
(-1.5)
P 		39.3
(-0.6)
P 		61.9
(3)
P 		37
B 53
(-0.5)
P 		32.2
(-2.5)
P 		27.1
(-3)
P 		31.8
(-2.6)
P 		54.5
(-0.4)
P 		90.3
(3)
P 		63
C 56
(0)
P 		42.5
(-1.1)
P 		48.7
(-0.6)
P 		20.3
(-3)
P 		50.5
(-0.4)
P 		90.9
(3)
P 		71
avr 44.5
(-1.2) 		44.4
(-1.2) 		34.5
(-2.3) 		28.6
(-3) 		48.1
(-0.8) 		81
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7516
Sequence Type Exemplar sequence
Representative Public ID T04A8.15 NCBI
Target Description T04A8.15 /REP_DB=WormBase Gene ID /WP=CE01069 /TR=Q22145 /GB=CAA84736.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=glucose-6-phosphate 1-dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065567 NCBI Caenorhabditis elegans T04A8.15 (T04A8.15) mRNA, complete cds. 11/11 None
SNAP00000041104 ENSEMBL cdna:SNAP chromosome:CEL140:III:4712582:4714965:-1 11/11 None
GENEFINDER00000041106 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4712582:4715139:-1 11/11 None
T04A8.15 ENSEMBL cdna:known chromosome:CEL140:III:4712534:4715150:-1 gene:T04A8.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4712581-4715139(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucose-6-phosphate 1-dehydrogenase
Ensembl T04A8.15
Entrez Gene 175620 Entrez gene
SwissProt Q22145 EMBL-EBI
WormBase CE33538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84736 Hypothetical protein T04A8.15 [Caenorhabditis elegans] ref|NP_497968.2| T04A8.15 [Caenorhabditis elegans] 0.0
blast CAE71147 Hypothetical protein CBG18002 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192673_S_AT
gatgatatgtcagcttccagtaccagtggcaaacatgacttgagtgcattgaaattggca
tttttaacatggcttcgaagtgatcagaatacagttttacatgagcacattctctcactc
caacctgtatccttggttagattccaaagtttccacaactctttgtttattgtaaatttt
caggaagaaatgttgattcgtctagagaaagctgacggcccacttggaaggattggaaaa
ggaaaactggtgaaattactggaaatgctgaaaatcacgtaccaacttccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATATGTCAGCTTCCAGTACCA 373 411 1882 Antisense
TCAGCTTCCAGTACCAGTGGCAAAC 282 623 1891 Antisense
GTGGCAAACATGACTTGAGTGCATT 442 491 1907 Antisense
ATTGGCATTTTTAACATGGCTTCGA 656 3 1935 Antisense
ATGGCTTCGAAGTGATCAGAATACA 533 51 1950 Antisense
CAGAATACAGTTTTACATGAGCACA 157 203 1966 Antisense
TACATGAGCACATTCTCTCACTCCA 588 643 1979 Antisense
GGAAGAAATGTTGATTCGTCTAGAG 564 525 2064 Antisense
GTCTAGAGAAAGCTGACGGCCCACT 243 469 2081 Antisense
GCTGACGGCCCACTTGGAAGGATTG 677 295 2092 Antisense
TGAAAATCACGTACCAACTTCCACA 402 573 2150 Antisense
Sequence Source Affymetrix Proprietary Database