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[192672_s_at] Heat shock hsp20 proteins

Description F43D9.4 /REP_DB=WormBase Gene ID /WP=CE00994 /GEN=sip-1 /TR=Q20363 /GB=CAA84703.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Heat shock hsp20 proteins
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 39      6grp_total > 96      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8498
1 2 3 4 range
A 856.1
(-3)
P 		891.8
(-3)
P 		1684.5
(-2.4)
P 		9264.3
(3)
P 		8408
B 1044.5
(-2.8)
P 		772.7
(-3)
P 		1992.7
(-2.1)
P 		8799.6
(3)
P 		8027
C 918.6
(-2.9)
P 		766.8
(-3)
P 		1567.6
(-2.3)
P 		8050.1
(3)
P 		7283
avr 939.7
(-2.9) 		810.4
(-3) 		1748.3
(-2.3) 		8704.7
(3) 		7894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27847
1 2 3 4 5 6 range
A 1035.4
(-3)
P 		1884.2
(-2.8)
P 		5382.9
(-2.1)
P 		12884.1
(-0.4)
P 		18659.4
(0.8)
P 		28699.4
(3)
P 		27664
B 852.8
(-3)
P 		1581.7
(-2.8)
P 		5715.7
(-1.6)
P 		11062.7
(-0.1)
P 		18191.2
(2)
P 		21856.5
(3)
P 		21004
C 1023.6
(-3)
P 		1504.5
(-2.9)
P 		6180.6
(-1.6)
P 		9915.5
(-0.5)
P 		22554.8
(3)
P 		22008.2
(2.8)
P 		21531
avr 970.6
(-3) 		1656.8
(-2.8) 		5759.7
(-1.8) 		11287.4
(-0.3) 		19801.8
(1.9) 		24188
(3) 		23217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1684
1 2 3 4 range
A 311.7
(-2.4)
P 		193.6
(-3)
P 		440.4
(-1.7)
P 		1356.1
(3)
P 		1163
B 333.1
(-2.5)
P 		190.8
(-3)
P 		461.8
(-2)
P 		1875.2
(3)
P 		1684
C 304.1
(-2.6)
P 		220.4
(-3)
P 		546.4
(-1.3)
P 		1357.4
(3)
P 		1137
avr 316.3
(-2.5) 		201.6
(-3) 		482.9
(-1.7) 		1529.6
(3) 		1328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7959
1 2 3 4 5 6 range
A 190.9
(-3)
P 		670.1
(-2.6)
P 		1172.3
(-2.1)
P 		3267.7
(-0.3)
P 		5630.6
(1.8)
P 		6987.4
(3)
P 		6797
B 296.7
(-3)
P 		526.5
(-2.8)
P 		1387.9
(-2.2)
P 		2930.1
(-1)
P 		7390.9
(2.4)
P 		8150.2
(3)
P 		7854
C 379.4
(-3)
P 		459.1
(-2.9)
P 		1573.1
(-2)
P 		1994
(-1.6)
P 		7298.4
(2.9)
P 		7367.4
(3)
P 		6988
avr 289
(-3) 		551.9
(-2.8) 		1377.8
(-2.1) 		2730.6
(-1) 		6773.3
(2.4) 		7501.7
(3) 		7213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192672_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7001
Sequence Type Exemplar sequence
Representative Public ID F43D9.4 NCBI
Target Description F43D9.4 /REP_DB=WormBase Gene ID /WP=CE00994 /GEN=sip-1 /TR=Q20363 /GB=CAA84703.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Heat shock hsp20 proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066915 NCBI Caenorhabditis elegans Stress Induced Protein family member (sip-1) (sip-1) mRNA, complete cds. 11/11 A 
SNAP00000024072 ENSEMBL cdna:SNAP chromosome:CEL140:III:10506052:10506587:-1 11/11 None
GENEFINDER00000024076 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10506052:10506587:-1 11/11 None
F43D9.4.2 ENSEMBL cdna:known chromosome:CEL140:III:10505916:10506681:-1 gene:F43D9.4 11/11 A 
F43D9.4.1 ENSEMBL cdna:known chromosome:CEL140:III:10505986:10506681:-1 gene:F43D9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10506047-10506583(-) 100.0 100.0
Public Domain and Genome References
Gene Title Heat shock hsp20 proteins
Gene Symbol sip-1
Ensembl F43D9.4
Entrez Gene 176471 Entrez gene
SwissProt Q20363 EMBL-EBI
WormBase CE00994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84703 Hypothetical protein F43D9.4 [Caenorhabditis elegans] ref|NP_499316.1| Stress Induced Protein family member (sip-1) [Caenorhabditis elegans] 7.0E-90
blast CAE71454 Hypothetical protein CBG18371 [Caenorhabditis briggsae] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:192672_S_AT
atcttgagggacacgttctcaccattgagggacaccacgaggtcaagaccgagcacgggt
tcagcaagagatcgttcactcgccagttcactcttccaaaggacgtcgacttggctcaca
tccacaccgtcatcaacaaggaaggacagatgaccatcgatgctccaaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTGAGGGACACGTTCTCACCAT 246 29 221 Antisense
GGACACGTTCTCACCATTGAGGGAC 17 527 229 Antisense
GTTCTCACCATTGAGGGACACCACG 377 443 235 Antisense
AGGGACACCACGAGGTCAAGACCGA 607 1 248 Antisense
GGTCAAGACCGAGCACGGGTTCAGC 470 503 261 Antisense
GACCGAGCACGGGTTCAGCAAGAGA 665 381 267 Antisense
CAGCAAGAGATCGTTCACTCGCCAG 522 203 282 Antisense
CCAGTTCACTCTTCCAAAGGACGTC 344 267 303 Antisense
TCACTCTTCCAAAGGACGTCGACTT 353 591 308 Antisense
AGGACAGATGACCATCGATGCTCCA 288 55 363 Antisense
AGATGACCATCGATGCTCCAAAGAC 655 67 368 Antisense
Sequence Source Affymetrix Proprietary Database