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[192670_at] serine/threonine protein phosphatase

Description C05A2.1 /REP_DB=WormBase Gene ID /WP=CE05220 /TR=O18148 /GB=CAA98291.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 74      6grp_total > 26      4grp_total > 30      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 722.2
(2.3)
P 		343
(-1.8)
P 		238.1
(-3)
P 		785
(3)
P 		547
B 818.3
(3)
P 		490.3
(-0.8)
P 		305.5
(-3)
P 		653.9
(1.1)
P 		513
C 777.8
(3)
P 		397.8
(-1.8)
P 		298.2
(-3)
P 		570.6
(0.4)
P 		480
avr 772.8
(3) 		410.4
(-1.4) 		280.6
(-3) 		669.8
(1.7) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 870.4
(3)
P 		648.8
(-0.6)
P 		612
(-1.2)
P 		523.9
(-2.6)
P 		624.9
(-1)
P 		498
(-3)
P 		372
B 874.9
(3)
P 		801.3
(1.5)
P 		575.4
(-3)
P 		683.1
(-0.8)
P 		597.8
(-2.6)
P 		712.6
(-0.3)
P 		300
C 680.8
(0.9)
P 		821.6
(3)
P 		409.6
(-3)
P 		719.9
(1.5)
P 		482.2
(-1.9)
P 		664.2
(0.7)
P 		412
avr 808.7
(3) 		757.2
(1.9) 		532.3
(-3) 		642.3
(-0.6) 		568.3
(-2.2) 		624.9
(-1) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 262.9
(3)
P 		74.4
(-2.6)
P 		62.2
(-3)
P 		114.9
(-1.4)
P 		201
B 260.9
(3)
P 		121.1
(-1.4)
P 		70.8
(-3)
P 		139.3
(-0.8)
P 		190
C 257.5
(3)
P 		114.4
(-2.3)
P 		103.9
(-2.7)
P 		96.2
(-3)
P 		161
avr 260.4
(3) 		103.3
(-2.2) 		79
(-3) 		116.8
(-1.7) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 160.5
(-0.8)
P 		230.8
(3)
P 		133.3
(-2.3)
P 		132.9
(-2.4)
P 		188.6
(0.7)
P 		121.2
(-3)
P 		110
B 304.4
(3)
P 		266.7
(1.6)
P 		139.7
(-3)
P 		180.9
(-1.5)
P 		242.9
(0.8)
P 		265.7
(1.6)
P 		165
C 252.3
(3)
P 		250.7
(2.9)
P 		104.3
(-3)
P 		144.8
(-1.4)
P 		156
(-0.9)
P 		222.3
(1.8)
P 		148
avr 239.1
(2.5) 		249.4
(3) 		125.8
(-3) 		152.9
(-1.7) 		195.8
(0.4) 		203.1
(0.8) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14262
Sequence Type Exemplar sequence
Representative Public ID C05A2.1 NCBI
Target Description C05A2.1 /REP_DB=WormBase Gene ID /WP=CE05220 /TR=O18148 /GB=CAA98291.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073333 NCBI Caenorhabditis elegans Protein PHosphatase family member (pph-1) (pph-1) mRNA, complete cds. 11/11 None
SNAP00000032021 ENSEMBL cdna:SNAP chromosome:CEL140:V:10706405:10707067:1 11/11 None
GENEFINDER00000032023 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10706461:10707067:1 10/11 None
C05A2.1 ENSEMBL cdna:known chromosome:CEL140:V:10705134:10707483:1 gene:C05A2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10704535-10707067(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Gene Symbol pph-1
Ensembl C05A2.1
Entrez Gene 182242 Entrez gene
SwissProt O18148 EMBL-EBI
WormBase CE37475 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98291 Hypothetical protein C05A2.1 [Caenorhabditis elegans] emb|CAA98230.2| Hypothetical protein C05A2.1 [Caenorhabditis elegans] ref|NP_505734.2| Protein PHosphatase family member (pph-1) [Caenorhabditis elegans] 0.0
blast CAE64873 Hypothetical protein CBG09678 [Caenorhabditis briggsae] 0.0
blast AAH41730 Ppp1ca-prov protein [Xenopus laevis] 1.0E-122
blast CAA98291 Hypothetical protein C05A2.1 [Caenorhabditis elegans] emb|CAA98230.2| Hypothetical protein C05A2.1 [Caenorhabditis elegans] ref|NP_505734.2| Protein PHosphatase family member (pph-1) [Caenorhabditis elegans] 1.0E-117
blast CAE64873 Hypothetical protein CBG09678 [Caenorhabditis briggsae] 1.0E-117
blast CAA98291 Hypothetical protein C05A2.1 [Caenorhabditis elegans] emb|CAA98230.2| Hypothetical protein C05A2.1 [Caenorhabditis elegans] ref|NP_505734.2| Protein PHosphatase family member (pph-1) [Caenorhabditis elegans] 1.0E-104
blast CAE64873 Hypothetical protein CBG09678 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-40
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.5E-11
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.2E-8
Sequence
Target Sequence 
>C. ELEGANS:192670_AT
taattgtatgccagttgccgctctaattgacaataaaatcttctgctgtcatggtggtct
ttcaccaaatcttcggtctctcgaccaactcaaacgactttcccgtccatgtgatgttca
ggaaacaggtcttctgtgtgatgtactttggtctgatccagatgcgacagttgttggatg
ggcaccaaatgaaagaggtgttagttatgtattcggtgtagatgtccttgctcaattcct
tcaaaaaatggatttggatattgttgttcgtggtcatcaagtagtcgaagatgggtacga
atttttcggccgacgtggattggttacggtattctctgcacccaactactgtggagaatt
tgataatgctggagctgtaatgaatgtcgatgaaaatttgttatgttctttccagattct
caaaccccaatcgcaacttgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGTATGCCAGTTGCCGCTCTA 437 633 651 Antisense
AATCTTCTGCTGTCATGGTGGTCTT 417 169 687 Antisense
TTTCACCAAATCTTCGGTCTCTCGA 673 671 710 Antisense
GTCTCTCGACCAACTCAAACGACTT 85 469 726 Antisense
TTTCCCGTCCATGTGATGTTCAGGA 659 669 749 Antisense
CAGGTCTTCTGTGTGATGTACTTTG 386 207 776 Antisense
TCGGTGTAGATGTCCTTGCTCAATT 136 607 863 Antisense
GAATTTTTCGGCCGACGTGGATTGG 556 319 949 Antisense
ATTGGTTACGGTATTCTCTGCACCC 334 3 969 Antisense
TGTTCTTTCCAGATTCTCAAACCCC 558 559 1054 Antisense
CTCAAACCCCAATCGCAACTTGTAA 661 225 1069 Antisense
Sequence Source Affymetrix Proprietary Database