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[192669_at] serine/threonine protein phosphatase

Description F22D6.9 /REP_DB=WormBase Gene ID /WP=CE24913 /TR=Q27494 /GB=CAA95811.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 86      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 53.2
(-1.6)
A 		75.8
(-0.8)
A 		11.2
(-3)
A 		189
(3)
A 		178
B 43.8
(-2.1)
A 		79.2
(-0.7)
A 		19.3
(-3)
A 		177.2
(3)
P 		158
C 55.8
(-2.8)
A 		55
(-3)
A 		69.6
(-0.1)
A 		85.4
(3)
A 		30
avr 50.9
(-2.1) 		70
(-1.1) 		33.4
(-3) 		150.5
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 121.3
(-2.8)
A 		105.7
(-3)
A 		164.7
(-2.1)
M 		276.5
(-0.4)
P 		259.9
(-0.7)
P 		507.1
(3)
P 		401
B 108.5
(-3)
A 		108.4
(-3)
A 		178.9
(-1.9)
P 		237.6
(-1.1)
P 		260.9
(-0.7)
P 		506.5
(3)
P 		398
C 85.2
(-3)
A 		151.5
(-2.2)
A 		154.9
(-2.2)
A 		240
(-1.2)
P 		265
(-0.9)
P 		604.2
(3)
P 		519
avr 105
(-3) 		121.9
(-2.8) 		166.2
(-2.2) 		251.4
(-1) 		261.9
(-0.8) 		539.3
(3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 19.4
(1)
A 		16.5
(0.3)
A 		2.9
(-3)
A 		27.7
(3)
A 		25
B 14
(-1.3)
A 		19.6
(-0.3)
A 		4.5
(-3)
A 		37.8
(3)
P 		33
C 18.5
(-0.5)
A 		15.8
(-2.2)
A 		24.3
(3)
A 		14.4
(-3)
A 		10
avr 17.3
(-0.5) 		17.3
(-0.5) 		10.6
(-3) 		26.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 22.4
(-3)
A 		37.6
(-2.1)
A 		35.9
(-2.2)
M 		70.1
(-0.2)
P 		78.4
(0.3)
P 		123.5
(3)
P 		101
B 37.7
(-2.9)
A 		36.1
(-3)
A 		43.4
(-2.7)
P 		62.9
(-1.9)
P 		106
(-0.3)
P 		188.9
(3)
P 		153
C 31.6
(-3)
A 		46.2
(-2.5)
A 		39.4
(-2.7)
A 		48.3
(-2.4)
P 		85.8
(-1.1)
P 		202.3
(3)
P 		171
avr 30.6
(-3) 		40
(-2.6) 		39.6
(-2.6) 		60.4
(-1.7) 		90.1
(-0.5) 		171.6
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2266
Sequence Type Exemplar sequence
Representative Public ID F22D6.9 NCBI
Target Description F22D6.9 /REP_DB=WormBase Gene ID /WP=CE24913 /TR=Q27494 /GB=CAA95811.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059611 NCBI Caenorhabditis elegans F22D6.9 (F22D6.9) mRNA, complete cds. 11/11 None
SNAP00000037654 ENSEMBL cdna:SNAP chromosome:CEL140:I:7108150:7109856:1 11/11 None
GENEFINDER00000037658 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7108150:7109856:1 11/11 None
F22D6.9 ENSEMBL cdna:known chromosome:CEL140:I:7107963:7109893:1 gene:F22D6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7108080-7109787(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl F22D6.9
Entrez Gene 184829 Entrez gene
SwissProt Q27494 EMBL-EBI
WormBase CE24913 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95811 Hypothetical protein F22D6.9 [Caenorhabditis elegans] ref|NP_492012.1| F22D6.9 [Caenorhabditis elegans] 0.0
blast CAE73095 Hypothetical protein CBG20474 [Caenorhabditis briggsae] 0.0
blast CAA95811 Hypothetical protein F22D6.9 [Caenorhabditis elegans] ref|NP_492012.1| F22D6.9 [Caenorhabditis elegans] 1.0E-173
blast CAE73095 Hypothetical protein CBG20474 [Caenorhabditis briggsae] 1.0E-153
blast CAB01164 Hypothetical protein F23B12.1 [Caenorhabditis elegans] ref|NP_506574.1| F23B12.1 [Caenorhabditis elegans] 5.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-29
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:192669_AT
tgatcgtgtcactttgcttcgtggaaatcatgaatcgagaccggtcaatagacagtatgg
tttctatggagaatgcgtaagacgatacagtgaaagaatctatgaagtatttcaattggc
attcaatgcgatgccactaactgcaattgttaacaaaagaataatgtgcatgcatggtgg
aatttctgaagaattgtttgatttgaaacaacttgatgctcttaaacgcccaatcgatac
acctgacattggaatcattgctgatttgacttgggctgatccggaatgcgaaattgacta
ctacaaggaatcaccacgtggcgctggaaagatcttcggagcaaaagcagttgatgagtt
ctgcaagcatttccaattggatttgatcgtgagagctcaccaagttgttcaggacggata
tgagttctttgctgatagaaaacttgtgactatcttctctgcaccattttattgtggaca
gactaacaatattgcttcaatgcttaatattgataaggacatggttgcttccttcatgct
tgtgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCGTGTCACTTTGCTTCGTGGA 595 565 513 Antisense
CATTCAATGCGATGCCACTAACTGC 232 209 632 Antisense
AACTTGATGCTCTTAAACGCCCAAT 612 137 722 Antisense
TAAACGCCCAATCGATACACCTGAC 376 641 735 Antisense
GACTTGGGCTGATCCGGAATGCGAA 211 369 780 Antisense
GAATCACCACGTGGCGCTGGAAAGA 708 327 820 Antisense
GATGAGTTCTGCAAGCATTTCCAAT 534 411 865 Antisense
GAGAGCTCACCAAGTTGTTCAGGAC 437 395 903 Antisense
AAAACTTGTGACTATCTTCTCTGCA 213 131 951 Antisense
TATCTTCTCTGCACCATTTTATTGT 644 659 963 Antisense
GTTGCTTCCTTCATGCTTGTGAAAC 579 439 1036 Antisense
Sequence Source Affymetrix Proprietary Database