[Home] | [Total List]

[192666_s_at] myo-inisitol-1-phosphate synthase

Description VF13D12L.1 /REP_DB=WormBase Gene ID /WP=CE21227 /TR=Q18664 /GB=CAA93771.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=myo-inisitol-1-phosphate synthase
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 14      6grp_total > 13      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3927
1 2 3 4 range
A 3970.5
(-0.3)
P 		2300.9
(-3)
P 		2641.7
(-2.4)
P 		6007
(3)
P 		3706
B 3650.4
(-0.5)
P 		2656.5
(-2.1)
P 		2080.5
(-3)
P 		5783.3
(3)
P 		3703
C 3898.8
(0.4)
P 		2438.4
(-2.9)
P 		2399
(-3)
P 		5052.4
(3)
P 		2653
avr 3839.9
(-0.3) 		2465.3
(-2.8) 		2373.7
(-3) 		5614.2
(3) 		3241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3438
1 2 3 4 5 6 range
A 4950.2
(3)
P 		3634.5
(0.6)
P 		4162.8
(1.5)
P 		3446.7
(0.2)
P 		2645.8
(-1.3)
P 		1725.9
(-3)
P 		3224
B 4620.5
(3)
P 		4525
(2.8)
P 		3781.3
(1)
P 		3914.8
(1.4)
P 		2882.5
(-1)
P 		2044.6
(-3)
P 		2576
C 3913.4
(1.9)
P 		4451.8
(3)
P 		3536.3
(1.1)
P 		4195.6
(2.5)
P 		2452.1
(-1.1)
P 		1511.9
(-3)
P 		2940
avr 4494.7
(3) 		4203.8
(2.4) 		3826.8
(1.5) 		3852.4
(1.6) 		2660.1
(-1) 		1760.8
(-3) 		2734
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 964
1 2 3 4 range
A 1445.7
(3)
P 		499.5
(-3)
P 		690.6
(-1.8)
P 		879.3
(-0.6)
P 		946
B 1164.1
(2.5)
P 		656.1
(-1.6)
P 		482.1
(-3)
P 		1232.4
(3)
P 		750
C 1290.6
(3)
P 		701
(-3)
P 		836.1
(-1.6)
P 		851.9
(-1.5)
P 		590
avr 1300.1
(3) 		618.9
(-3) 		669.6
(-2.6) 		987.9
(0.3) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1188
1 2 3 4 5 6 range
A 912.5
(0.4)
P 		1292.6
(3)
P 		906.6
(0.3)
P 		874.2
(0.1)
P 		798.4
(-0.4)
P 		420.2
(-3)
P 		872
B 1607.7
(3)
P 		1506.2
(2.3)
P 		918.2
(-1.9)
P 		1036.9
(-1.1)
P 		1171.1
(-0.1)
P 		762.4
(-3)
P 		845
C 1450.5
(3)
P 		1358.4
(2.4)
P 		900
(-0.5)
P 		843.7
(-0.9)
P 		793.5
(-1.2)
P 		506.1
(-3)
P 		944
avr 1323.6
(2.5) 		1385.7
(3) 		908.3
(-0.5) 		918.3
(-0.4) 		921
(-0.4) 		562.9
(-3) 		823
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192666_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3362
Sequence Type Exemplar sequence
Representative Public ID VF13D12L.1 NCBI
Target Description VF13D12L.1 /REP_DB=WormBase Gene ID /WP=CE21227 /TR=Q18664 /GB=CAA93771.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=myo-inisitol-1-phosphate synthase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064098 NCBI Caenorhabditis elegans VF13D12L.1 (VF13D12L.1) mRNA, complete cds. 11/11 None
VF13D12L.1.2 ENSEMBL cdna:known chromosome:CEL140:II:11698231:11700212:-1 gene:VF13D12L.1 11/11 None
VF13D12L.1.3 ENSEMBL cdna:known chromosome:CEL140:II:11698231:11700212:-1 gene:VF13D12L.1 11/11 None
VF13D12L.1.1 ENSEMBL cdna:known chromosome:CEL140:II:11698231:11700205:-1 gene:VF13D12L.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11698317-11700164(-) 99.94 99.94
Public Domain and Genome References
Gene Title myo-inisitol-1-phosphate synthase
Ensembl VF13D12L.1
Entrez Gene 174792 Entrez gene
SwissProt Q18664 EMBL-EBI
WormBase CE31076 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15621_F_AT inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 at
ATH1-121501:263433_AT inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 at
CANINE:1586373_AT similar to myo-inositol 1-phosphate synthase A1 cfa
CANINE_2:CFAAFFX.22815.1.S1_S_AT similar to myo-inositol 1-phosphate synthase A1 cfa
DROSOPHILA_2:1635848_AT dm
DROSGENOME1:153296_AT dm
HG-U133_PLUS_2:222240_S_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133A_2:222240_S_AT myo-inositol 1-phosphate synthase A1 hs
HG-FOCUS:222240_S_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133A:222240_S_AT myo-inositol 1-phosphate synthase A1 hs
HU35KSUBA:RC_AA609185_AT myo-inositol 1-phosphate synthase A1 hs
HU35KSUBA:AA459545_F_AT myo-inositol 1-phosphate synthase A1 hs
HU35KSUBC:RC_AA405460_AT myo-inositol 1-phosphate synthase A1 hs
U133_X3P:HS.33713.2.S1_3P_A_AT myo-inositol 1-phosphate synthase A1 hs
U133_X3P:HS.324618.3.A1_3P_A_AT myo-inositol 1-phosphate synthase A1 hs
U133_X3P:HS.324618.1.S1_3P_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133_PLUS_2:228552_S_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133B:228552_S_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133_PLUS_2:229324_X_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133B:229324_X_AT myo-inositol 1-phosphate synthase A1 hs
HG-U95C:49690_AT myo-inositol 1-phosphate synthase A1 hs
HG-U95E:76665_AT myo-inositol 1-phosphate synthase A1 hs
HG-U133_PLUS_2:228417_AT Myo-inositol 1-phosphate synthase A1 hs
HG-U133B:228417_AT Myo-inositol 1-phosphate synthase A1 hs
HG-U95C:49692_AT Myo-inositol 1-phosphate synthase A1 hs
HU35KSUBA:RC_AA454554_AT Myo-inositol 1-phosphate synthase A1 hs
U133_X3P:HS.33713.1.A1_3P_AT Myo-inositol 1-phosphate synthase A1 hs
MU11KSUBA:AA221219_S_AT myo-inositol 1-phosphate synthase A1 mm
MG-U74AV2:162401_F_AT myo-inositol 1-phosphate synthase A1 mm
MG-U74AV2:160337_AT myo-inositol 1-phosphate synthase A1 mm
MOE430A:1415977_AT myo-inositol 1-phosphate synthase A1 mm
MOUSE430A_2:1415977_AT myo-inositol 1-phosphate synthase A1 mm
MOUSE430_2:1415977_AT myo-inositol 1-phosphate synthase A1 mm
RG-U34C:RC_AA859240_AT similar to myo-inositol 1-phosphate synthase A1 rn
RG-U34C:RC_AI177413_S_AT similar to myo-inositol 1-phosphate synthase A1 rn
RAE230A:1371817_AT similar to myo-inositol 1-phosphate synthase A1 rn
RAT230_2:1371817_AT similar to myo-inositol 1-phosphate synthase A1 rn
YEAST_2:1779129_AT Inositol 1-phosphate synthase, involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6021 myo-inositol biosynthesis inferred from electronic annotation QuickGO AmiGO
8654 phospholipid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4512 inositol-3-phosphate synthase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93771 Hypothetical protein VF13D12L.1 [Caenorhabditis elegans] emb|CAA22132.2| Hypothetical protein VF13D12L.1 [Caenorhabditis elegans] ref|NP_496499.2| VF13D12L.1 [Caenorhabditis elegans] 0.0
blast 1VKO Chain , Crystal Structure Of Inositol-3-Phosphate Synthase (Ce21227) From Caenorhabditis Elegans At 2.30 A Resolution 0.0
blast CAE59710 Hypothetical protein CBG03142 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002587 EMBL-EBI Myo-inositol-1-phosphate synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192666_S_AT
tcaaatcggcgttcgtggacttcctggtgagcagtggtatgaagcccgaatcgatcgtct
cgtacaaccatctcggaaacaatgacggaaagaacttgagcgaggcgagacaattccgct
cgaaggagatctcgaaatcatcggtcgtcgatgatatggtcaaatcgaatcagatcctct
tcccagatgccaagaatccggattactgcgttgtgatcaagtatgtaccatatgttgctg
attcgaagagagccatggacgaatatatctgcagtatcttcatgggcggaaagcagactt
tcgtggttcacaacacgtgcgaggactctttgctcgcctcgcctctcatctacgacctgg
cgattctcacggagctcgcgagccgtgtctcctacaaagtcgacgacgagtacaagccat
tccattcggtgctctcgatcctttcgctgctcctgaaggctccagttgtgccaccgggca
cgccgatcagcaatgccttcatgcgacaattctcgacgctcacgaagctggtgaccgcgt
tggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATCGGCGTTCGTGGACTTCCT 184 629 971 Antisense
TATGAAGCCCGAATCGATCGTCTCG 418 655 1008 Antisense
GTCTCGTACAACCATCTCGGAAACA 247 467 1027 Antisense
CAAATCGAATCAGATCCTCTTCCCA 665 191 1131 Antisense
TATCTGCAGTATCTTCATGGGCGGA 324 653 1236 Antisense
AAAGCAGACTTTCGTGGTTCACAAC 702 123 1260 Antisense
ACGTGCGAGGACTCTTTGCTCGCCT 59 95 1285 Antisense
AGTACAAGCCATTCCATTCGGTGCT 323 61 1379 Antisense
GCTCCTGAAGGCTCCAGTTGTGCCA 534 295 1419 Antisense
TCATGCGACAATTCTCGACGCTCAC 653 621 1469 Antisense
TCACGAAGCTGGTGACCGCGTTGGC 98 623 1490 Antisense
Sequence Source Affymetrix Proprietary Database