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[192664_s_at] serine/threonine specific protein phosphatase /// serine/threonine protein phosphatase

Description ZK938.1 /REP_DB=WormBase Gene ID /WP=CE15483 /TR=Q23671 /GB=CAA90149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 88      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 27.1
(-1)
A 		19.1
(-2.1)
A 		13.4
(-3)
A 		53.5
(3)
A 		40
B 11.7
(-3)
A 		17.2
(-0.9)
A 		22.5
(1.2)
A 		27.2
(3)
A 		16
C 37.4
(3)
A 		32.1
(1.4)
A 		28.4
(0.3)
M 		17.3
(-3)
A 		20
avr 25.4
(-0.9) 		22.8
(-2.3) 		21.4
(-3) 		32.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 40.3
(-2.1)
A 		27.3
(-2.4)
A 		1
(-3)
A 		27
(-2.4)
A 		143.7
(0.2)
P 		269.4
(3)
P 		268
B 27.9
(-2.7)
A 		17
(-2.9)
A 		17.2
(-2.9)
A 		14.8
(-3)
A 		149.7
(0.2)
P 		271.1
(3)
P 		256
C 25.3
(-2.4)
A 		17.7
(-2.6)
A 		3.1
(-3)
A 		3.6
(-3)
A 		122.5
(0.1)
P 		231.4
(3)
P 		228
avr 31.2
(-2.4) 		20.7
(-2.7) 		7.1
(-3) 		15.1
(-2.8) 		138.6
(0.2) 		257.3
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.9
(3)
A 		4.1
(-2.4)
A 		3.5
(-3)
A 		7.8
(1)
A 		6
B 3.7
(-3)
A 		4.2
(-1.6)
A 		5.2
(1.3)
A 		5.8
(3)
A 		2
C 12.4
(3)
A 		9.2
(1)
A 		9.9
(1.4)
M 		2.9
(-3)
A 		10
avr 8.7
(3) 		5.8
(-2.4) 		6.2
(-1.7) 		5.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 7.4
(-2.3)
A 		9.7
(-2.1)
A 		0.2
(-3)
A 		6.9
(-2.4)
A 		43.4
(1)
P 		65.6
(3)
P 		65
B 9.7
(-2.6)
A 		5.7
(-2.9)
A 		4.2
(-3)
A 		3.9
(-3)
A 		60.8
(0.5)
P 		101.1
(3)
P 		97
C 9.4
(-2.3)
A 		5.4
(-2.6)
A 		0.8
(-3)
A 		0.7
(-3)
A 		39.6
(0)
P 		77.5
(3)
P 		77
avr 8.8
(-2.5) 		6.9
(-2.6) 		1.7
(-3) 		3.8
(-2.8) 		47.9
(0.5) 		81.4
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3374
Sequence Type Exemplar sequence
Representative Public ID ZK938.1 NCBI
Target Description ZK938.1 /REP_DB=WormBase Gene ID /WP=CE15483 /TR=Q23671 /GB=CAA90149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063766(11), NM_063716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063766 NCBI Caenorhabditis elegans F52H3.6 (F52H3.6) mRNA, complete cds. 11/11 A 
NM_063716 NCBI Caenorhabditis elegans ZK938.1 (ZK938.1) mRNA, complete cds. 11/11 A 
SNAP00000021623 ENSEMBL cdna:SNAP chromosome:CEL140:II:10026561:10027774:-1 11/11 None
GENEFINDER00000021635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10026561:10027774:-1 11/11 None
ZK938.1 ENSEMBL cdna:known chromosome:CEL140:II:9829403:9830607:1 gene:ZK938.1 11/11 A 
F52H3.6 ENSEMBL cdna:known chromosome:CEL140:II:10026561:10027774:-1 gene:F52H3.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025829 2/11 Cross Hyb Matching Probes None
SNAP00000044673 6/11 Cross Hyb Matching Probes None
GENEFINDER00000044688 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9829399-9830604(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine specific protein phosphatase
serine/threonine protein phosphatase
Ensembl ZK938.1
F52H3.6
Entrez Gene 174561 Entrez gene
191467 Entrez gene
SwissProt Q27501 EMBL-EBI
Q23671 EMBL-EBI
WormBase CE03402 Wormbase
CE15483 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91326 Hypothetical protein F52H3.6 [Caenorhabditis elegans] ref|NP_496167.1| F52H3.6 [Caenorhabditis elegans] 0.0
blast CAA90149 Hypothetical protein ZK938.1 [Caenorhabditis elegans] emb|CAB09135.1| Hypothetical protein ZK938.1 [Caenorhabditis elegans] ref|NP_496117.1| ZK938.1 [Caenorhabditis elegans] 0.0
blast CAA90149 Hypothetical protein ZK938.1 [Caenorhabditis elegans] emb|CAB09135.1| Hypothetical protein ZK938.1 [Caenorhabditis elegans] ref|NP_496117.1| ZK938.1 [Caenorhabditis elegans] 1.0E-170
blast CAA91326 Hypothetical protein F52H3.6 [Caenorhabditis elegans] ref|NP_496167.1| F52H3.6 [Caenorhabditis elegans] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.2E-41
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-41
Sequence
Target Sequence 
>C. ELEGANS:192664_S_AT
accacgagtgtgcttcaatcaaccgtacgtatggattttacgatgagtgtaaacgaagat
attctttggctctatacaatgagttccaaaatttgttcaacagtctcccattgtgcgcaa
tgatctccggacgaatcttctgcatgcatggtggattgagcccggaattggtttcatgga
cacagcttgccaaaatcatacgcccattcgatccaccaaacgcgtgccttgcaatggatc
tcctttgggcagatccagagaacaaccataccggatggggaaagaactcacgcggagttt
cctatatttttggagccaacgttgtaaaggacttcacggagaagatgaatatcgatctca
ttgctagaggccatcaggttgttcaagatggatacgaatttttcgccgacaaacgcctcg
tgacaatcttctctgcacccaaatactgtggagaattcgacaacaatgcaggaattatga
ttgtcgacgaacggctcatcatttccttcgagatcctgaagccagccatgagagaagtaa
aaattcaagctcgtgcagccgccaaaaacaagtcaaccagaagtatactcgtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACGAGTGTGCTTCAATCAACCG 168 85 371 Antisense
CGAAGATATTCTTTGGCTCTATACA 249 253 424 Antisense
CCGGACGAATCTTCTGCATGCATGG 41 265 497 Antisense
CCTTGCAATGGATCTCCTTTGGGCA 293 269 597 Antisense
CTCCTTTGGGCAGATCCAGAGAACA 261 231 610 Antisense
GATGAATATCGATCTCATTGCTAGA 31 413 714 Antisense
ATCAGGTTGTTCAAGATGGATACGA 397 29 743 Antisense
GATACGAATTTTTCGCCGACAAACG 274 413 761 Antisense
CACCCAAATACTGTGGAGAATTCGA 329 199 806 Antisense
TCCTTCGAGATCCTGAAGCCAGCCA 439 591 874 Antisense
GTCAACCAGAAGTATACTCGTGAGC 341 463 942 Antisense
Sequence Source Affymetrix Proprietary Database