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[192663_at] serine/threonine protein phosphatase

Description ZK938.1 /REP_DB=WormBase Gene ID /WP=CE15483 /TR=Q23671 /GB=CAA90149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 88      4grp_total > 22      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 28.4
(3)
A 		14.4
(-1.9)
A 		11.2
(-3)
A 		13.7
(-2.1)
A 		17
B 54.7
(3)
A 		12.4
(-2)
A 		4.4
(-3)
A 		35.5
(0.7)
A 		50
C 45.2
(-0.1)
A 		9.5
(-2.8)
A 		7.5
(-3)
A 		86.6
(3)
A 		79
avr 42.8
(2.6) 		12.1
(-2.3) 		7.7
(-3) 		45.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 14.7
(-2.9)
A 		4
(-3)
A 		16.4
(-2.8)
A 		49.9
(-2.4)
A 		205.2
(-0.3)
P 		453.7
(3)
P 		450
B 40
(-2.5)
A 		3.2
(-3)
A 		8.1
(-2.9)
A 		30.5
(-2.6)
A 		237.2
(0.2)
P 		436.9
(3)
P 		434
C 28.8
(-2.7)
A 		16
(-2.9)
A 		9.7
(-3)
A 		77.8
(-2)
A 		215.7
(-0)
P 		426.1
(3)
P 		416
avr 27.8
(-2.7) 		7.7
(-3) 		11.4
(-2.9) 		52.7
(-2.4) 		219.4
(-0.1) 		438.9
(3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.3
(3)
A 		3.1
(-2.2)
A 		2.9
(-2.3)
A 		2
(-3)
A 		8
B 17.5
(3)
A 		3.1
(-2.2)
A 		1
(-3)
A 		7.6
(-0.6)
A 		17
C 15
(3)
A 		2.7
(-3)
A 		2.6
(-3)
A 		14.6
(2.8)
A 		12
avr 14.3
(3) 		3
(-2.6) 		2.2
(-3) 		8.1
(-0.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 2.7
(-2.9)
A 		1.4
(-3)
A 		3.6
(-2.9)
A 		12.6
(-2.4)
A 		61.9
(0.3)
P 		110.5
(3)
P 		109
B 13.9
(-2.5)
A 		1.1
(-3)
A 		2
(-3)
A 		8.1
(-2.7)
A 		96.4
(0.5)
P 		162.9
(3)
P 		162
C 10.7
(-2.6)
A 		4.9
(-2.9)
A 		2.5
(-3)
A 		15.6
(-2.4)
A 		69.8
(-0.1)
P 		142.7
(3)
P 		140
avr 9.1
(-2.7) 		2.5
(-3) 		2.7
(-3) 		12.1
(-2.6) 		76
(0.2) 		138.7
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3374
Sequence Type Exemplar sequence
Representative Public ID ZK938.1 NCBI
Target Description ZK938.1 /REP_DB=WormBase Gene ID /WP=CE15483 /TR=Q23671 /GB=CAA90149.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063716 NCBI Caenorhabditis elegans ZK938.1 (ZK938.1) mRNA, complete cds. 11/11 A 
ZK938.1 ENSEMBL cdna:known chromosome:CEL140:II:9829403:9830607:1 gene:ZK938.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025829 2/11 Cross Hyb Matching Probes None
SNAP00000044673 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044688 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9829399-9830604(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl ZK938.1
Entrez Gene 191467 Entrez gene
SwissProt Q23671 EMBL-EBI
WormBase CE15483 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90149 Hypothetical protein ZK938.1 [Caenorhabditis elegans] emb|CAB09135.1| Hypothetical protein ZK938.1 [Caenorhabditis elegans] ref|NP_496117.1| ZK938.1 [Caenorhabditis elegans] 0.0
blast CAA91326 Hypothetical protein F52H3.6 [Caenorhabditis elegans] ref|NP_496167.1| F52H3.6 [Caenorhabditis elegans] 1.0E-170
blast CAE57964 Hypothetical protein CBG01025 [Caenorhabditis briggsae] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-41
Sequence
Target Sequence 
>C. ELEGANS:192663_AT
aatttgttcaacagtctcccattgtgcgcaatgatctccggacgaatcttctgcatgcat
ggtggattgagcccggaattggtttcatggacacagcttgccaaaatcatacgcccattc
gatccaccaaacgcgtgccttgcaatggatctcctttgggcagatccagagaacaaccat
accggatggggaaagaactcacgcggagtttcctatatttttggagccaacgttgtaaag
gacttcacggagaagatgaatatcgatctcattgctagaggccatcaggttgttcaagat
ggatacgaatttttcgccgacaaacgcctcgtgacaatcttctctgcacccaaatactgt
ggagaattcgacaacaatgcaggaattatgattgtcgacgaacggctcatcatttccttc
gagatcctgaagccagccatgagagaagtaaaaattcaagctcgtgcagccgccaaaaac
aagtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGTTCAACAGTCTCCCATTGT 641 173 460 Antisense
AGTCTCCCATTGTGCGCAATGATCT 499 61 472 Antisense
GATTGAGCCCGGAATTGGTTTCATG 207 425 524 Antisense
GGTTTCATGGACACAGCTTGCCAAA 636 505 540 Antisense
GCCAAAATCATACGCCCATTCGATC 150 277 559 Antisense
ACCAAACGCGTGCCTTGCAATGGAT 88 83 585 Antisense
GGATGGGGAAAGAACTCACGCGGAG 397 513 643 Antisense
ACTCACGCGGAGTTTCCTATATTTT 451 99 656 Antisense
ATTGTCGACGAACGGCTCATCATTT 319 5 850 Antisense
GTAAAAATTCAAGCTCGTGCAGCCG 319 461 907 Antisense
GTGCAGCCGCCAAAAACAAGTCAAC 500 479 923 Antisense
Sequence Source Affymetrix Proprietary Database