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[192662_s_at] --- /// BTB (also known as BR-C/Ttk) domain.

Description F57C2.2 /REP_DB=WormBase Gene ID /WP=CE16153 /TR=O45594 /GB=CAB05524.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 14      6grp_total > 96      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 47.5
(-3)
P 		78.8
(-1.6)
P 		102.2
(-0.6)
P 		184.3
(3)
P 		137
B 47.5
(-2.5)
A 		34.5
(-3)
A 		74.9
(-1.5)
P 		197.9
(3)
P 		163
C 39.6
(-3)
A 		46.6
(-2.8)
A 		75.9
(-2.2)
P 		310.7
(3)
P 		271
avr 44.9
(-3) 		53.3
(-2.7) 		84.3
(-1.7) 		231
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 23.1
(-3)
A 		70.4
(-2.2)
A 		110.7
(-1.5)
P 		153.2
(-0.7)
P 		344.1
(2.6)
P 		366.7
(3)
P 		344
B 36.7
(-3)
A 		53.9
(-2.8)
P 		116.6
(-2.1)
P 		152.5
(-1.7)
P 		514.2
(2.5)
P 		558.8
(3)
P 		522
C 41.8
(-3)
P 		44.6
(-3)
A 		96.5
(-2.2)
P 		176.1
(-1)
P 		441.8
(3)
P 		414.1
(2.6)
P 		400
avr 33.9
(-3) 		56.3
(-2.7) 		107.9
(-1.9) 		160.6
(-1.2) 		433.4
(2.8) 		446.5
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 17.3
(-2.9)
P 		17.1
(-3)
P 		26.7
(2.8)
P 		27
(3)
P 		10
B 15.2
(-1.8)
A 		8.5
(-3)
A 		17.4
(-1.4)
P 		42.2
(3)
P 		34
C 13.1
(-3)
A 		13.4
(-3)
A 		26.5
(-1)
P 		52.4
(3)
P 		39
avr 15.2
(-2.5) 		13
(-3) 		23.5
(-0.7) 		40.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 4.3
(-3)
A 		25
(-1.8)
A 		24.1
(-1.8)
P 		38.8
(-0.9)
P 		103.8
(3)
P 		89.3
(2.1)
P 		100
B 12.8
(-3)
A 		17.9
(-2.8)
P 		28.3
(-2.5)
P 		40.4
(-2.2)
P 		208.9
(3)
P 		208.4
(3)
P 		196
C 15.5
(-2.9)
P 		13.6
(-3)
A 		24.6
(-2.5)
P 		35.4
(-2)
P 		143
(3)
P 		138.6
(2.8)
P 		129
avr 10.9
(-3) 		18.8
(-2.7) 		25.7
(-2.4) 		38.2
(-1.8) 		151.9
(3) 		145.4
(2.7) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192662_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3452
Sequence Type Exemplar sequence
Representative Public ID F57C2.2 NCBI
Target Description F57C2.2 /REP_DB=WormBase Gene ID /WP=CE16153 /TR=O45594 /GB=CAB05524.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064615(11), NM_064614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064615 NCBI Caenorhabditis elegans F57C2.1 (F57C2.1) mRNA, complete cds. 11/11 A 
NM_064614 NCBI Caenorhabditis elegans F57C2.2 (F57C2.2) mRNA, complete cds. 11/11 A 
SNAP00000006883 ENSEMBL cdna:SNAP chromosome:CEL140:II:14520973:14522012:-1 11/11 None
SNAP00000006884 ENSEMBL cdna:SNAP chromosome:CEL140:II:14522354:14523397:-1 11/11 None
GENEFINDER00000006888 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14522354:14523397:-1 11/11 None
GENEFINDER00000006889 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14520973:14522012:-1 11/11 None
F57C2.2 ENSEMBL cdna:known chromosome:CEL140:II:14520973:14522012:-1 gene:F57C2.2 11/11 A 
F57C2.1 ENSEMBL cdna:known chromosome:CEL140:II:14522354:14523397:-1 gene:F57C2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14520969-14522009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
BTB (also known as BR-C/Ttk) domain.
Ensembl F57C2.2
F57C2.1
Entrez Gene 186442 Entrez gene
186443 Entrez gene
SwissProt O45593 EMBL-EBI
O45594 EMBL-EBI
WormBase CE28341 Wormbase
CE16153 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 1.0E-171
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-163
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-141
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-33
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.4E-33
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-10
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.0E-5
Sequence
Target Sequence 
>C. ELEGANS:192662_S_AT
acgagaacgatgcaattttggtgattggaaagaaaaagcttcatgtctgcaaagctttcc
tctcgtatcattcaagctttttccgtgcaattttctcgtcaactttcaaggaagggcaaa
tgagtgagattccgatcaaggatgttacctacaaggatttcgctctgatgctgagcacaa
tctacccagatgctgttttcccaaatgatcgcacagcggagaagcttcttgaaatgggtg
atcgtttcattattcaatccgttatcaaccacgtggaatatcatctccttcacaacacga
aaattggaaatgaaaagttgatgtggatggcggatagatacggaatgtcaaagcttcttg
tgaagtcaatccgtcaaatggattctatcgaaaaggccaaggctctgaaatcttctccgg
actatgcgaaattgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGAACGATGCAATTTTGGTGAT 400 93 428 Antisense
AGCTTCATGTCTGCAAAGCTTTCCT 608 77 464 Antisense
CATTCAAGCTTTTTCCGTGCAATTT 483 215 496 Antisense
GAAGCTTCTTGAAATGGGTGATCGT 298 341 648 Antisense
GGGTGATCGTTTCATTATTCAATCC 462 497 663 Antisense
GTTTCATTATTCAATCCGTTATCAA 44 451 671 Antisense
AGTTGATGTGGATGGCGGATAGATA 261 65 743 Antisense
ATTCTATCGAAAAGGCCAAGGCTCT 575 3 809 Antisense
AAGGCCAAGGCTCTGAAATCTTCTC 291 161 820 Antisense
CTGAAATCTTCTCCGGACTATGCGA 203 239 832 Antisense
TCTCCGGACTATGCGAAATTGTCGA 77 611 841 Antisense
Sequence Source Affymetrix Proprietary Database