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[192661_at] BTB (also known as BR-C/Ttk) domain.

Description F57C2.2 /REP_DB=WormBase Gene ID /WP=CE16153 /TR=O45594 /GB=CAB05524.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_total > 96      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 51.1
(-2.5)
A 		119.8
(0.6)
A 		39
(-3)
A 		173.8
(3)
A 		135
B 54.2
(-3)
A 		91.1
(-1.4)
A 		93.2
(-1.3)
A 		193.4
(3)
P 		139
C 41.5
(-3)
A 		120.3
(-0.7)
A 		80.5
(-1.9)
A 		251.6
(3)
P 		210
avr 48.9
(-3) 		110.4
(-0.7) 		70.9
(-2.2) 		206.3
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 98.1
(-2.2)
A 		44.8
(-3)
A 		120.6
(-1.9)
A 		171.7
(-1.2)
M 		466.2
(3)
P 		416.3
(2.3)
P 		421
B 76.9
(-2.3)
A 		27.3
(-3)
A 		48.2
(-2.7)
A 		236
(0)
P 		355.3
(1.8)
P 		440.9
(3)
P 		414
C 48.9
(-3)
A 		69.4
(-2.7)
A 		122.6
(-1.9)
A 		212.8
(-0.5)
M 		343.1
(1.5)
P 		441.9
(3)
P 		393
avr 74.6
(-2.6) 		47.2
(-3) 		97.1
(-2.2) 		206.8
(-0.5) 		388.2
(2.3) 		433
(3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 18.6
(0.2)
A 		26
(3)
A 		10.2
(-3)
A 		25.4
(2.8)
A 		16
B 17.3
(-3)
A 		22.5
(-1.7)
A 		21.6
(-1.9)
A 		41.2
(3)
P 		24
C 13.8
(-3)
A 		34.6
(1.4)
A 		28.1
(0)
A 		42.4
(3)
P 		29
avr 16.6
(-3) 		27.7
(0.4) 		20
(-2) 		36.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 18.1
(-2.9)
A 		15.9
(-3)
A 		26.3
(-2.5)
A 		43.5
(-1.7)
M 		140.7
(3)
P 		101.4
(1.1)
P 		125
B 26.8
(-2.3)
A 		9.1
(-3)
A 		11.7
(-2.9)
A 		62.5
(-0.9)
P 		144.3
(2.2)
P 		164.4
(3)
P 		155
C 18.1
(-3)
A 		21.2
(-2.9)
A 		31.2
(-2.4)
A 		42.8
(-1.9)
M 		111
(1.3)
P 		147.9
(3)
P 		130
avr 21
(-2.7) 		15.4
(-3) 		23.1
(-2.6) 		49.6
(-1.3) 		132
(2.7) 		137.9
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3452
Sequence Type Exemplar sequence
Representative Public ID F57C2.2 NCBI
Target Description F57C2.2 /REP_DB=WormBase Gene ID /WP=CE16153 /TR=O45594 /GB=CAB05524.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064614 NCBI Caenorhabditis elegans F57C2.2 (F57C2.2) mRNA, complete cds. 11/11 A 
SNAP00000006883 ENSEMBL cdna:SNAP chromosome:CEL140:II:14520973:14522012:-1 11/11 None
GENEFINDER00000006889 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14520973:14522012:-1 11/11 None
F57C2.2 ENSEMBL cdna:known chromosome:CEL140:II:14520973:14522012:-1 gene:F57C2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14520969-14522009(-) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Ensembl F57C2.2
Entrez Gene 186443 Entrez gene
SwissProt O45594 EMBL-EBI
WormBase CE16153 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 1.0E-171
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 1.0E-127
blast AAN65319 Hypothetical protein F39E9.2 [Caenorhabditis elegans] ref|NP_494499.2| F39E9.2 [Caenorhabditis elegans] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-33
Sequence
Target Sequence 
>C. ELEGANS:192661_AT
gggtataattatatccccagcgcgacctttgagtattcctttgttccttattacgcccaa
gccgaaggatccttatacgaccaaatgttcctcccatcccacgagaacgatgcaattttg
gtgattggaaagaaaaagcttcatgtctgcaaagctttcctctcgtatcattcaagcttt
ttccgtgcaattttctcgtcaactttcaaggaagggcaaatgagtgagattccgatcaag
gatgttacctacaaggatttcgctctgatgctgagcacaatctacccagatgctgttttc
ccaaatgatcgcacagcggagaagcttcttgaaatgggtgatcgtttcattattcaatcc
gttatcaaccacgtggaatatcatctccttcacaacacgaaaattggaaatgaaaagttg
atgtggatggcggatagatacggaatgtcaaagcttcttgtgaagtcaatccgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTATAATTATATCCCCAGCGCGA 496 495 328 Antisense
GACCTTTGAGTATTCCTTTGTTCCT 626 371 351 Antisense
TTATTACGCCCAAGCCGAAGGATCC 602 677 375 Antisense
CTTATACGACCAAATGTTCCTCCCA 121 213 399 Antisense
GTGCAATTTTCTCGTCAACTTTCAA 258 481 512 Antisense
CCTACAAGGATTTCGCTCTGATGCT 292 267 575 Antisense
AATCTACCCAGATGCTGTTTTCCCA 95 171 606 Antisense
GTTTTCCCAAATGATCGCACAGCGG 109 449 622 Antisense
GATCGCACAGCGGAGAAGCTTCTTG 548 417 634 Antisense
TCAATCCGTTATCAACCACGTGGAA 511 631 681 Antisense
GCTTCTTGTGAAGTCAATCCGTCAA 636 305 780 Antisense
Sequence Source Affymetrix Proprietary Database