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[192656_s_at] sodium/phosphate transporter protein

Description K10G9.1 /REP_DB=WormBase Gene ID /WP=CE01603 /TR=Q09932 /GB=CAA88135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter protein
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 212.5
(-3)
P 		413
(1.3)
P 		462.9
(2.4)
P 		492.6
(3)
P 		280
B 212.6
(-3)
P 		371.3
(0.6)
P 		473.7
(3)
P 		465
(2.8)
P 		261
C 180
(-3)
P 		418.6
(1.4)
P 		482
(2.6)
P 		503.1
(3)
P 		323
avr 201.7
(-3) 		401
(1.2) 		472.9
(2.7) 		486.9
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 152.2
(-2.6)
P 		202.4
(-1.4)
P 		135.2
(-3)
P 		203
(-1.4)
P 		239.4
(-0.5)
P 		385.3
(3)
P 		250
B 129.4
(-3)
P 		226.1
(-1.2)
P 		171.9
(-2.2)
P 		237
(-1)
P 		253.6
(-0.7)
P 		458.8
(3)
P 		329
C 147.5
(-3)
P 		214.8
(-1.4)
P 		168.3
(-2.5)
P 		175.1
(-2.3)
P 		257.8
(-0.3)
P 		392.3
(3)
P 		245
avr 143
(-3) 		214.4
(-1.4) 		158.5
(-2.7) 		205
(-1.6) 		250.3
(-0.6) 		412.1
(3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 77.4
(-2.3)
P 		89.6
(-0.9)
P 		121
(3)
P 		72.1
(-3)
P 		49
B 67.8
(-3)
P 		91.7
(0.4)
P 		109.8
(3)
P 		99.1
(1.5)
P 		42
C 59.6
(-3)
P 		120.3
(0.4)
P 		168
(3)
P 		84.8
(-1.6)
P 		108
avr 68.3
(-3) 		100.5
(-0) 		132.9
(3) 		85.3
(-1.4) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 28.1
(-3)
P 		72
(1)
P 		29.4
(-2.9)
P 		51.5
(-0.9)
P 		72.2
(1)
P 		93.8
(3)
P 		66
B 45
(-2.8)
P 		75.3
(-1.4)
P 		41.7
(-3)
P 		62.8
(-2)
P 		103
(-0.2)
P 		171.1
(3)
P 		129
C 54.7
(-1.8)
P 		65.5
(-1.1)
P 		42.8
(-2.5)
P 		35.2
(-3)
P 		83.4
(0)
P 		131.3
(3)
P 		96
avr 42.6
(-2.7) 		70.9
(-0.9) 		38
(-3) 		49.8
(-2.2) 		86.2
(0.1) 		132.1
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192656_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8050
Sequence Type Exemplar sequence
Representative Public ID K10G9.1 NCBI
Target Description K10G9.1 /REP_DB=WormBase Gene ID /WP=CE01603 /TR=Q09932 /GB=CAA88135.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066875 NCBI Caenorhabditis elegans K10G9.1 (K10G9.1) mRNA, complete cds. 11/11 None
SNAP00000030107 ENSEMBL cdna:SNAP chromosome:CEL140:III:10295897:10298233:1 11/11 None
GENEFINDER00000030121 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10295897:10298233:1 11/11 None
K10G9.1 ENSEMBL cdna:known chromosome:CEL140:III:10295021:10298564:1 gene:K10G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10295078-10298229(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter protein
Ensembl K10G9.1
Entrez Gene 176441 Entrez gene
SwissProt Q09932 EMBL-EBI
WormBase CE01603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88135 Hypothetical protein K10G9.1 [Caenorhabditis elegans] emb|CAA85289.1| Hypothetical protein K10G9.1 [Caenorhabditis elegans] ref|NP_499276.1| K10G9.1 [Caenorhabditis elegans] 0.0
blast CAE56802 Hypothetical protein CBG24614 [Caenorhabditis briggsae] 0.0
blast CAA88134 Hypothetical protein T07A5.3 [Caenorhabditis elegans] ref|NP_499277.1| T07A5.3 [Caenorhabditis elegans] sp|Q10046|YRT3_CAEEL Hypothetical protein T07A5.3 in chromosome III 0.0
blast CAA88135 Hypothetical protein K10G9.1 [Caenorhabditis elegans] emb|CAA85289.1| Hypothetical protein K10G9.1 [Caenorhabditis elegans] ref|NP_499276.1| K10G9.1 [Caenorhabditis elegans] 1.0E-179
blast CAE56802 Hypothetical protein CBG24614 [Caenorhabditis briggsae] 1.0E-160
blast CAE56802 Hypothetical protein CBG24614 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499276.1 10 50-69,128-150,155-177,192-214,221-240,281-303,323-345,385-407,419-438,448-470
K10G9.1 10 50-69,128-150,155-177,192-214,221-240,281-303,323-345,385-407,419-438,448-470
SNAP00000030107 7 15-37,84-106,121-138,159-178,182-204,216-235,245-267
GENEFINDER00000030121 7 15-37,84-106,121-138,159-178,182-204,216-235,245-267
Sequence
Target Sequence 
>C. ELEGANS:192656_S_AT
gcagtgactttcttgatcattgcttgctcgggagccggagccgttctttctggattcaat
gtgaaccactttgatattgctccaagacatgctccaatccttatgggaattgcaaatgga
ctcggagccatcgcaggcgttggtggaatcgtcacaaattcgttgacatatcagaatcct
gatggctggcaatgggttttccttctagccatgtcaatcgatatctttggaataattttc
ttcctcattttcgcgaaaggagatgttttgccgtgggctcgcgaaccggagaaggaggag
acgttcaacgaatttgtgcgacgaatgtccacaatggtgagaagcttgtcaaggcgaaca
aggacacgcagtactgatacgaattatgataaaatggaggaagaaagagtcaactcttcg
gaaatgaaggcttgtgccaaatccgatgttccagtaccagaagaaggtgttctgaacgag
acgcaagccatcggtggaagcctcgaagttgtgcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTGACTTTCTTGATCATTGCTT 699 311 1171 Antisense
ATCATTGCTTGCTCGGGAGCCGGAG 483 27 1186 Antisense
AGCCGTTCTTTCTGGATTCAATGTG 558 83 1209 Antisense
GATATTGCTCCAAGACATGCTCCAA 149 427 1243 Antisense
GCAAATGGACTCGGAGCCATCGCAG 606 315 1282 Antisense
CATCGCAGGCGTTGGTGGAATCGTC 233 211 1299 Antisense
GATGGCTGGCAATGGGTTTTCCTTC 300 401 1351 Antisense
TTTTCCTTCTAGCCATGTCAATCGA 447 677 1367 Antisense
GTGCCAAATCCGATGTTCCAGTACC 64 479 1604 Antisense
GAGACGCAAGCCATCGGTGGAAGCC 279 393 1648 Antisense
GTGGAAGCCTCGAAGTTGTGCCTGA 231 491 1664 Antisense
Sequence Source Affymetrix Proprietary Database