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[192655_s_at]

Description W09C2.1 /REP_DB=WormBase Gene ID /WP=CE21285 /GEN=elt-1 /TR=SW:P28515 /GB=CAA92494.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=elongation factor ELT
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 61      6grp_total > 14      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 552.7
(2.6)
P 		555.6
(2.7)
P 		566.8
(3)
P 		373.3
(-3)
P 		194
B 500
(-1)
P 		673.7
(3)
P 		588.4
(1.1)
P 		410.2
(-3)
P 		264
C 565.6
(0.9)
P 		688.9
(3)
P 		646
(2.3)
P 		329.8
(-3)
P 		359
avr 539.4
(0.8) 		639.4
(3) 		600.4
(2.1) 		371.1
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 527.3
(3)
P 		517.5
(2.7)
P 		380.1
(-1.2)
P 		379.3
(-1.2)
P 		338.6
(-2.4)
P 		317.1
(-3)
P 		210
B 533.5
(3)
P 		506.9
(2.3)
P 		450.3
(0.7)
P 		362.3
(-1.7)
P 		316
(-3)
P 		352.1
(-2)
P 		218
C 463.3
(3)
P 		430.6
(1.8)
P 		397.8
(0.6)
P 		436.1
(2)
P 		298.3
(-3)
P 		341.2
(-1.4)
P 		165
avr 508
(3) 		485
(2.3) 		409.4
(-0.1) 		392.6
(-0.6) 		317.6
(-3) 		336.8
(-2.4) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 201.3
(3)
P 		120.6
(-0.3)
P 		148.2
(0.8)
P 		54.6
(-3)
P 		147
B 159.5
(2.5)
P 		166.4
(3)
P 		136.3
(0.7)
P 		87.4
(-3)
P 		79
C 187.2
(1.7)
P 		198.1
(2)
P 		225.2
(3)
P 		55.6
(-3)
P 		170
avr 182.7
(3) 		161.7
(1.9) 		169.9
(2.3) 		65.9
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 97.2
(-1.9)
P 		184
(3)
P 		82.8
(-2.7)
P 		96.2
(-1.9)
P 		102.2
(-1.6)
P 		77.2
(-3)
P 		107
B 185.6
(3)
P 		168.7
(1.9)
P 		109.3
(-2.1)
P 		96
(-3)
P 		128.4
(-0.8)
P 		131.3
(-0.6)
P 		90
C 171.7
(3)
P 		131.4
(0.1)
P 		101.2
(-2)
P 		87.7
(-3)
P 		96.5
(-2.4)
P 		114.2
(-1.1)
P 		84
avr 151.5
(2.1) 		161.4
(3) 		97.8
(-2.6) 		93.3
(-3) 		109
(-1.6) 		107.6
(-1.7) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192655_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8749
Sequence Type Exemplar sequence
Representative Public ID W09C2.1 NCBI
Target Description W09C2.1 /REP_DB=WormBase Gene ID /WP=CE21285 /GEN=elt-1 /TR=SW:P28515 /GB=CAA92494.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=elongation factor ELT
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069307 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-1) (elt-1) mRNA, complete cds. 11/11 None
GENEFINDER00000018762 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9615138:9619635:1 11/11 None
W09C2.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:9615133:9620113:1 gene:W09C2.1 11/11 None
W09C2.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:9615133:9620360:1 gene:W09C2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018754 3/11 Cross Hyb Matching Probes None
SNAP00000018755 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9615245-9619641(+) 100.0 100.0
Public Domain and Genome References
Ensembl W09C2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30234 Hypothetical protein W09C2.1a [Caenorhabditis elegans] 0.0
blast NP_501708 Erythroid-Like Transcription factor family member (elt-1) [Caenorhabditis elegans] pir||T26296 hypothetical protein W09C2.1 - Caenorhabditis elegans 0.0
blast CAJ30235 Hypothetical protein W09C2.1b [Caenorhabditis elegans] emb|CAA40967.1| elt-1 [Caenorhabditis elegans] sp|P28515|ELT1_CAEEL Transcription factor elt-1 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.4E-20
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 3.0E-20
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.4E-20
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:192655_S_AT
gatcaggaaactacctctgcaacgcatgcggcctctacttcaagatgaaccatcatgctc
gtccattggtgaagccgaaaaagagacagcagaacgctcaaaaacggaccggaatcgagt
gtgtcaactgtcgtacaaatacaacaacactctggagaagaaatggagaagggcatccag
tgtgcaatgcttgtggactctactttaaacttcataaggtggaacgtccaatcaccatga
agaaggatggaattcagacccgtaatcgcaagctctccgcaaagggatcgcgaagaatga
agaaagagaatggcggaactccgacttcaatgggaatgcctacaacatcttcaagtattt
catctggaatcgaacttgatcaaagtggagtttggggaatgaaaaacactcaaccaatgc
tcatgacaccgacagcatatgcattcccagcatccaatttctacttcaactcgatcgagg
atcaattggagtataaaacgtgccctccaatgatggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGGAAACTACCTCTGCAACGC 97 421 821 Antisense
TGCGGCCTCTACTTCAAGATGAACC 673 581 847 Antisense
AGATGAACCATCATGCTCGTCCATT 601 67 863 Antisense
GCTTGTGGACTCTACTTTAAACTTC 545 303 1009 Antisense
GATGGAATTCAGACCCGTAATCGCA 372 407 1066 Antisense
ATCGCAAGCTCTCCGCAAAGGGATC 218 37 1085 Antisense
GAATGGCGGAACTCCGACTTCAATG 533 331 1128 Antisense
CACTCAACCAATGCTCATGACACCG 228 195 1227 Antisense
GACACCGACAGCATATGCATTCCCA 586 367 1245 Antisense
CAGCATCCAATTTCTACTTCAACTC 451 203 1268 Antisense
TAAAACGTGCCCTCCAATGATGGTG 424 637 1314 Antisense
Sequence Source Affymetrix Proprietary Database