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[192652_at] cadherin transmembranous domain

Description F59B10.3 /REP_DB=WormBase Gene ID /WP=CE01592 /TR=SW:Q09951 /GB=CAA88597.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cadherin transmembranous domain
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 24      4grp_high_8_8 > 46      6grp_highest_nonorm > 51      6grp_total > 02      4grp_total > 49      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1071
1 2 3 4 range
A 116.6
(-3)
P 		1083.1
(3)
P 		870.5
(1.7)
P 		170.6
(-2.7)
P 		967
B 141.9
(-3)
M 		1171.9
(3)
P 		954.1
(1.7)
P 		142.8
(-3)
P 		1030
C 100.6
(-3)
P 		1144.2
(2.9)
P 		1170.6
(3)
P 		115
(-2.9)
P 		1070
avr 119.7
(-3) 		1133.1
(3) 		998.4
(2.2) 		142.8
(-2.9) 		1013

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 618.7
(1.1)
P 		713.4
(2.8)
P 		444.3
(-2.1)
P 		486.5
(-1.3)
P 		723.1
(3)
P 		394.3
(-3)
P 		329
B 638.2
(1.3)
P 		737.5
(3)
P 		426.7
(-2.2)
P 		436.4
(-2.1)
P 		505.6
(-0.9)
P 		380.6
(-3)
P 		357
C 676.4
(1.8)
P 		734.5
(3)
P 		447.6
(-3)
P 		506
(-1.8)
P 		546.3
(-0.9)
P 		452
(-2.9)
P 		287
avr 644.4
(1.4) 		728.5
(3) 		439.5
(-2.4) 		476.3
(-1.7) 		591.7
(0.4) 		409
(-3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 42.5
(-2.5)
P 		235.1
(3)
P 		227.6
(2.8)
P 		25
(-3)
P 		210
B 45.2
(-2.7)
M 		289.4
(3)
P 		221.1
(1.4)
P 		30.4
(-3)
P 		259
C 33.3
(-2.8)
P 		329
(1.8)
P 		408
(3)
P 		19.4
(-3)
P 		389
avr 40.3
(-2.6) 		284.5
(3) 		285.6
(3) 		24.9
(-3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 114.1
(-2.3)
P 		253.7
(3)
P 		96.8
(-3)
P 		123.4
(-2)
P 		218.2
(1.6)
P 		96
(-3)
P 		158
B 222
(2)
P 		245.5
(3)
P 		103.6
(-3)
P 		115.6
(-2.5)
P 		205.4
(1.3)
P 		141.9
(-1.4)
P 		142
C 250.7
(3)
P 		224.1
(1.9)
P 		113.9
(-2.5)
P 		101.8
(-3)
P 		176.8
(0)
P 		151.3
(-1)
P 		149
avr 195.6
(1) 		241.1
(3) 		104.8
(-3) 		113.6
(-2.6) 		200.1
(1.2) 		129.7
(-1.9) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3050
Sequence Type Exemplar sequence
Representative Public ID F59B10.3 NCBI
Target Description F59B10.3 /REP_DB=WormBase Gene ID /WP=CE01592 /TR=SW:Q09951 /GB=CAA88597.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cadherin transmembranous domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063863 NCBI Caenorhabditis elegans F59B10.3 (F59B10.3) mRNA, complete cds. 11/11 None
F59B10.3 ENSEMBL cdna:known chromosome:CEL140:II:10510452:10512901:1 gene:F59B10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006042 8/11 Cross Hyb Matching Probes None
GENEFINDER00000006051 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10510422-10512649(+) 100.0 100.0
Public Domain and Genome References
Gene Title cadherin transmembranous domain
Ensembl F59B10.3
Entrez Gene 174615 Entrez gene
WormBase CE35884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88597 Hypothetical protein F59B10.3 [Caenorhabditis elegans] ref|NP_496264.2| F59B10.3 [Caenorhabditis elegans] 1.0E-101
blast CAE59665 Hypothetical protein CBG03085 [Caenorhabditis briggsae] 1.0E-98
blast Q09951 Hypothetical protein F59B10.3 in chromosome II 2.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496264.2 1 95-117
F59B10.3 1 95-117
Sequence
Target Sequence 
>C. ELEGANS:192652_AT
ttcattcttttctgagccgtttttccactccacccatttatatttttaaagtgttcacac
gttcctcgttccgtttaccatgtcgaattctagatgggatggatatcgtaaaacaagcca
ctcaggctccgggcctgaaccgtcagtttgacacacaaacaaacgtcttagcagccgaca
gcttcgtcagaagcggactcgttggacaacaagtcaacacaattgatccatcgttctacg
attgcatctatggagtcgcaaatagtgcaaacacggtcatcgaacggtgctacaaggata
tcggatgctgcgccgatggttgctgtaagaatggatattggcataaccgttacggatggg
cagttgcattgatcgtgattttctgtattcttgtaattgtcgcttttgtcatttggctcg
tcgtatggctcttcaaccgttccaaggataagcaacaaaaacgcgagctctacgagcatt
atgaggagaacaactattccggtctcccaactccacaaccaaccccgactcactacccag
ccgaacaatattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTCTTTTCTGAGCCGTTTTTC 233 689 122 Antisense
TCCACTCCACCCATTTATATTTTTA 242 589 145 Antisense
TCGTTCCGTTTACCATGTCGAATTC 703 599 187 Antisense
GGGCCTGAACCGTCAGTTTGACACA 163 493 252 Antisense
CAAACGTCTTAGCAGCCGACAGCTT 582 191 281 Antisense
AACACGGTCATCGAACGGTGCTACA 507 135 391 Antisense
GATCGTGATTTTCTGTATTCTTGTA 137 419 492 Antisense
ATTGTCGCTTTTGTCATTTGGCTCG 244 5 517 Antisense
GCTCTTCAACCGTTCCAAGGATAAG 626 299 549 Antisense
GGAGAACAACTATTCCGGTCTCCCA 470 517 606 Antisense
TCACTACCCAGCCGAACAATATTCA 664 627 651 Antisense
Sequence Source Affymetrix Proprietary Database