[Home] | [Total List]

[192651_s_at] --- /// Zinc finger, C2H2 type (2 domains)

Description Y48A6C.3 /REP_DB=WormBase Gene ID /WP=CE19198 /TR=Q9XWK6 /GB=CAA21653.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_total > 59      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 99.1
(-2)
M 		87.9
(-3)
A 		152.7
(3)
A 		130.9
(1)
A 		65
B 80.5
(-3)
A 		116.8
(3)
P 		102.5
(0.6)
A 		92.5
(-1)
A 		36
C 76.7
(-3)
A 		130.9
(1.9)
A 		85.3
(-2.2)
M 		142.9
(3)
A 		66
avr 85.4
(-3) 		111.9
(1.3) 		113.5
(1.6) 		122.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 92.8
(-1.8)
A 		78.3
(-3)
A 		86.3
(-2.3)
A 		102.3
(-1)
A 		151.9
(3)
A 		96.3
(-1.5)
P 		74
B 116.1
(2.6)
A 		75.1
(-0.4)
A 		39.4
(-3)
A 		90.5
(0.7)
M 		90.2
(0.7)
A 		121.8
(3)
P 		82
C 72.6
(-1.1)
A 		101
(0.6)
A 		76
(-0.9)
A 		81.5
(-0.6)
A 		40.8
(-3)
A 		141.8
(3)
P 		101
avr 93.8
(0) 		84.8
(-1) 		67.2
(-3) 		91.4
(-0.3) 		94.3
(0.1) 		120
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 36.1
(1.9)
M 		19.1
(-3)
A 		39.9
(3)
A 		19.2
(-3)
A 		21
B 25.7
(1)
A 		28.8
(3)
P 		23.7
(-0.4)
A 		19.7
(-3)
A 		9
C 25.4
(-2.4)
A 		37.6
(3)
A 		29.7
(-0.5)
M 		24.1
(-3)
A 		14
avr 29.1
(1.8) 		28.5
(1.5) 		31.1
(3) 		21
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 17.1
(-3)
A 		27.9
(-0.7)
A 		18.8
(-2.6)
A 		25.9
(-1.2)
A 		45.8
(3)
A 		23.5
(-1.7)
P 		29
B 40.4
(2.2)
A 		25
(-0.4)
A 		9.6
(-3)
A 		24
(-0.6)
M 		36.7
(1.5)
A 		45.4
(3)
P 		36
C 26.9
(-0.6)
A 		30.8
(0.1)
A 		19.4
(-1.9)
A 		16.4
(-2.4)
A 		13.2
(-3)
A 		47.5
(3)
P 		34
avr 28.1
(0.2) 		27.9
(0.1) 		15.9
(-3) 		22.1
(-1.4) 		31.9
(1.2) 		38.8
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192651_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7255
Sequence Type Exemplar sequence
Representative Public ID Y48A6C.3 NCBI
Target Description Y48A6C.3 /REP_DB=WormBase Gene ID /WP=CE19198 /TR=Q9XWK6 /GB=CAA21653.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067029(11), NM_067031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067029 NCBI Caenorhabditis elegans Y48A6C.1 (Y48A6C.1) mRNA, complete cds. 11/11 A 
NM_067031 NCBI Caenorhabditis elegans Y48A6C.3 (Y48A6C.3) mRNA, complete cds. 11/11 None
GENEFINDER00000028339 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11101145:11116099:-1 11/11 None
SNAP00000028333 ENSEMBL cdna:SNAP chromosome:CEL140:III:11102345:11106011:-1 11/11 None
SNAP00000028335 ENSEMBL cdna:SNAP chromosome:CEL140:III:11113121:11117813:-1 11/11 None
GENEFINDER00000028342 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11117112:11119076:-1 11/11 None
Y48A6C.1 ENSEMBL cdna:known chromosome:CEL140:III:11101967:11107044:-1 gene:Y48A6C.1 11/11 A 
Y48A6C.3 ENSEMBL cdna:known chromosome:CEL140:III:11117112:11119076:-1 gene:Y48A6C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11117107-11119072(-) 100.0 100.0
chrIII:11104999-11106270(-) 87.69 87.69
Public Domain and Genome References
Gene Title
Zinc finger, C2H2 type (2 domains)
Ensembl Y48A6C.1
Y48A6C.3
Entrez Gene 190013 Entrez gene
190015 Entrez gene
SwissProt Q9XWK8 EMBL-EBI
Q9XWK6 EMBL-EBI
WormBase CE28855 Wormbase
CE19198 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21651 Hypothetical protein Y48A6C.1 [Caenorhabditis elegans] ref|NP_499430.1| Y48A6C.1 [Caenorhabditis elegans] 0.0
blast CAA21653 Hypothetical protein Y48A6C.3 [Caenorhabditis elegans] ref|NP_499432.1| Y48A6C.3 [Caenorhabditis elegans] 0.0
blast CAA21653 Hypothetical protein Y48A6C.3 [Caenorhabditis elegans] ref|NP_499432.1| Y48A6C.3 [Caenorhabditis elegans] 1.0E-169
blast CAA21651 Hypothetical protein Y48A6C.1 [Caenorhabditis elegans] ref|NP_499430.1| Y48A6C.1 [Caenorhabditis elegans] 1.0E-169
Sequence
Target Sequence 
>C. ELEGANS:192651_S_AT
gatcttctctgtcgtttggcaaaattgtgtacaaaaattggaaattttgttgagaaggaa
aagagaaaggacatcataatcaaaggaaagatgtacgctaccgaagcctggaacaccgat
tcgtacaacatcttggctgctcattgggccgctgtgatgtcaggaaaggcaatcgaatat
cttgaaggcgatgaaaagaatctggagatgagacactgcagacaatatctcgatcgtgcc
atctctatccaggcaggaaaaaatgcaatgtacaataatattcttggccgttgggctctt
tcagcactggagatttgggagtctgaccgacaacagttaattcatcattatgccacccca
tatgacgctatcgacgatgccatttatcagttcagatccgctttcgatctcataccgtat
tggatcgataatattgtacacctgggcaaagcgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCTCTGTCGTTTGGCAAAAT 637 419 436 Antisense
TCGTACAACATCTTGGCTGCTCATT 238 605 556 Antisense
CTCATTGGGCCGCTGTGATGTCAGG 488 229 575 Antisense
GACACTGCAGACAATATCTCGATCG 530 367 647 Antisense
AATATTCTTGGCCGTTGGGCTCTTT 131 173 712 Antisense
TGGGCTCTTTCAGCACTGGAGATTT 361 553 727 Antisense
TTAATTCATCATTATGCCACCCCAT 179 685 772 Antisense
ACCCCATATGACGCTATCGACGATG 236 87 790 Antisense
TCGACGATGCCATTTATCAGTTCAG 589 597 806 Antisense
TCAGATCCGCTTTCGATCTCATACC 630 621 827 Antisense
ATTGTACACCTGGGCAAAGCGCTTC 354 5 868 Antisense
Sequence Source Affymetrix Proprietary Database