[Home] | [Total List]

[192649_at] dihydroxyvitamin D3-induced protein

Description R06B9.2 /REP_DB=WormBase Gene ID /WP=CE16300 /TR=O17984 /GB=CAB05789.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster 6grp_total > 90      4grp_total > 32      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 27.1
(-3)
A 		35.5
(-1.2)
A 		48.1
(1.6)
P 		54.5
(3)
A 		27
B 22.6
(-3)
A 		44.5
(0.2)
A 		64.2
(3)
A 		32
(-1.6)
P 		42
C 8.7
(-3)
A 		37.8
(2.3)
A 		35.6
(1.9)
A 		41.5
(3)
A 		33
avr 19.5
(-3) 		39.3
(1) 		49.3
(3) 		42.7
(1.7) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 25.3
(-3)
A 		32.1
(-1.7)
M 		44.2
(0.6)
A 		48.9
(1.5)
P 		36.6
(-0.9)
A 		56.9
(3)
P 		32
B 43.9
(-0.6)
A 		44.5
(-0.4)
P 		55.4
(3)
P 		44.6
(-0.4)
A 		41.8
(-1.3)
P 		36.4
(-3)
P 		19
C 32.1
(-0.3)
A 		28.8
(-0.7)
A 		13.3
(-3)
A 		54.5
(3)
A 		50.9
(2.5)
P 		29.2
(-0.7)
A 		41
avr 33.8
(-3) 		35.1
(-2.5) 		37.6
(-1.5) 		49.3
(3) 		43.1
(0.6) 		40.8
(-0.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.9
(-0.3)
A 		7.7
(-3)
A 		12.6
(3)
P 		8
(-2.6)
A 		5
B 7.2
(-2.7)
A 		11
(0.1)
A 		14.9
(3)
A 		6.8
(-3)
P 		8
C 2.9
(-3)
A 		10.9
(2.1)
A 		12.4
(3)
A 		7
(-0.4)
A 		10
avr 6.7
(-3) 		9.9
(-0.1) 		13.3
(3) 		7.3
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.7
(-3)
A 		11.4
(1.4)
M 		9.6
(0.2)
A 		12.4
(2)
P 		11
(1.1)
A 		13.9
(3)
P 		9
B 15.3
(1)
A 		14.8
(0.5)
P 		13.5
(-1)
P 		11.8
(-3)
A 		17
(3)
P 		13.6
(-0.9)
P 		5
C 11.9
(0.9)
A 		8.8
(-0.5)
A 		3.4
(-3)
A 		11
(0.5)
A 		16.5
(3)
P 		9.8
(-0.1)
A 		13
avr 10.6
(-1.2) 		11.7
(-0.1) 		8.8
(-3) 		11.7
(-0.1) 		14.8
(3) 		12.4
(0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2603
Sequence Type Exemplar sequence
Representative Public ID R06B9.2 NCBI
Target Description R06B9.2 /REP_DB=WormBase Gene ID /WP=CE16300 /TR=O17984 /GB=CAB05789.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064483 NCBI Caenorhabditis elegans R06B9.2 (R06B9.2) mRNA, complete cds. 11/11 None
SNAP00000002411 ENSEMBL cdna:SNAP chromosome:CEL140:II:13752217:13768300:1 11/11 None
GENEFINDER00000002415 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13763324:13768300:1 11/11 None
R06B9.2 ENSEMBL cdna:known chromosome:CEL140:II:13766215:13768300:1 gene:R06B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13766211-13768297(+) 100.0 100.0
Public Domain and Genome References
Gene Title dihydroxyvitamin D3-induced protein
Ensembl R06B9.2
Entrez Gene 187636 Entrez gene
SwissProt O17984 EMBL-EBI
WormBase CE16300 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 0.0
blast CAB05788 Hypothetical protein R06B9.4 [Caenorhabditis elegans] ref|NP_496881.1| R06B9.4 [Caenorhabditis elegans] 0.0
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 0.0
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 1.0E-174
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 1.0E-172
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 1.0E-158
blast CAB05789 Hypothetical protein R06B9.2 [Caenorhabditis elegans] ref|NP_496884.1| R06B9.2 [Caenorhabditis elegans] 1.0E-143
blast CAE73270 Hypothetical protein CBG20688 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.1E-34
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 2.4E-45
Pfam IPR000698 EMBL-EBI Arrestin 7.2E-29
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-29
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 1.7E-59
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Sequence
Target Sequence 
>C. ELEGANS:192649_AT
caagacccatactgtccattacacggccaccgccaaacacctggacactgcagtccctct
atggagaaaaactgataaagcggcaaggttactccccgggaagtacgaatggcagttttg
gtttcaacttccatgttccgtacttcccccgagttttgagggaaacaatgggaacattcg
atattgggtgagagccgaagtgagcagatcctggaagttcaatattgttgacgagagctc
gtttgagatagctccattcctggacctcaacacaatgcctattgcacgtactcctctaga
tggatttgctgtcaaaaatctcggatgttgctgcttcagaaatggtaatagcgtgagcga
tgaggtgcaaacggtacatgatattgtgcactccgttcggaacacagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGACCCATACTGTCCATTACACG 327 181 213 Antisense
CAAACACCTGGACACTGCAGTCCCT 461 191 246 Antisense
TGATAAAGCGGCAAGGTTACTCCCC 412 565 285 Antisense
ACTCCCCGGGAAGTACGAATGGCAG 602 99 303 Antisense
TGGTTTCAACTTCCATGTTCCGTAC 143 551 331 Antisense
GAGAGCCGAAGTGAGCAGATCCTGG 152 393 402 Antisense
GTTTGAGATAGCTCCATTCCTGGAC 705 451 453 Antisense
TGGACCTCAACACAATGCCTATTGC 637 547 473 Antisense
CTATTGCACGTACTCCTCTAGATGG 485 223 491 Antisense
AAAATCTCGGATGTTGCTGCTTCAG 464 133 527 Antisense
GTGCACTCCGTTCGGAACACAGTCA 503 479 598 Antisense
Sequence Source Affymetrix Proprietary Database