[Home] | [Total List]

[192648_at] sodium/phosphate transport protein

Description C18H9.5 /REP_DB=WormBase Gene ID /WP=CE01805 /TR=Q09484 /GB=AAC46689.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 85      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2987
1 2 3 4 range
A 183.1
(-2.7)
P 		63.7
(-3)
P 		142.1
(-2.8)
P 		2654.2
(3)
P 		2591
B 197.7
(-2.8)
P 		97.9
(-3)
P 		101.7
(-3)
P 		3050.9
(3)
P 		2953
C 211.5
(-2.7)
P 		182
(-2.8)
P 		108.8
(-3)
P 		2411.8
(3)
P 		2303
avr 197.4
(-2.8) 		114.5
(-3) 		117.5
(-3) 		2705.6
(3) 		2591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 119
(-3)
P 		123
(-3)
P 		213.4
(-1.9)
P 		548.5
(2.2)
P 		295.2
(-0.9)
P 		616.9
(3)
P 		498
B 120.9
(-3)
P 		136.2
(-2.8)
P 		210.3
(-2.1)
P 		442.1
(0.3)
P 		374.4
(-0.4)
P 		697.6
(3)
P 		577
C 129.7
(-3)
P 		163.4
(-2.6)
P 		211.2
(-2.1)
P 		438.9
(0.2)
P 		323.9
(-1)
P 		702.5
(3)
P 		573
avr 123.2
(-3) 		140.9
(-2.8) 		211.6
(-2) 		476.5
(0.9) 		331.2
(-0.7) 		672.3
(3) 		549
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 636
1 2 3 4 range
A 66.7
(-2.2)
P 		13.8
(-3)
P 		37.2
(-2.6)
P 		388.5
(3)
P 		375
B 63
(-2.6)
P 		24.2
(-3)
P 		23.6
(-3)
P 		650.1
(3)
P 		627
C 70
(-2.5)
P 		52.3
(-2.8)
P 		37.9
(-3)
P 		406.7
(3)
P 		369
avr 66.6
(-2.5) 		30.1
(-3) 		32.9
(-3) 		481.8
(3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 21.9
(-3)
P 		43.7
(-2)
P 		46.5
(-1.8)
P 		139.1
(2.5)
P 		89.1
(0.1)
P 		150.2
(3)
P 		128
B 42.1
(-3)
P 		45.3
(-2.9)
P 		51.1
(-2.8)
P 		117.1
(-0.9)
P 		152.1
(0)
P 		260.1
(3)
P 		218
C 48.1
(-3)
P 		49.9
(-2.9)
P 		53.8
(-2.8)
P 		88.3
(-1.7)
P 		104.8
(-1.2)
P 		235.2
(3)
P 		187
avr 37.4
(-3) 		46.3
(-2.7) 		50.5
(-2.6) 		114.8
(-0.4) 		115.3
(-0.4) 		215.2
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4346
Sequence Type Exemplar sequence
Representative Public ID C18H9.5 NCBI
Target Description C18H9.5 /REP_DB=WormBase Gene ID /WP=CE01805 /TR=Q09484 /GB=AAC46689.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062961 NCBI Caenorhabditis elegans C18H9.5 (C18H9.5) mRNA, complete cds. 11/11 None
SNAP00000038938 ENSEMBL cdna:SNAP chromosome:CEL140:II:6692702:6694638:-1 11/11 None
GENEFINDER00000038945 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6692702:6695162:-1 11/11 None
C18H9.5 ENSEMBL cdna:known chromosome:CEL140:II:6692702:6695248:-1 gene:C18H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6692698-6695245(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transport protein
Ensembl C18H9.5
Entrez Gene 174104 Entrez gene
SwissProt Q09484 EMBL-EBI
WormBase CE01805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46689 Hypothetical protein C18H9.5 [Caenorhabditis elegans] ref|NP_495362.1| C18H9.5 [Caenorhabditis elegans] 0.0
blast CAE66040 Hypothetical protein CBG11239 [Caenorhabditis briggsae] 0.0
blast AAC46689 Hypothetical protein C18H9.5 [Caenorhabditis elegans] ref|NP_495362.1| C18H9.5 [Caenorhabditis elegans] 1.0E-171
blast CAE66040 Hypothetical protein CBG11239 [Caenorhabditis briggsae] 1.0E-141
blast AAC24431 Hypothetical protein T19D12.9 [Caenorhabditis elegans] ref|NP_495353.1| T19D12.9 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495362.1 12 31-53,82-104,111-133,137-159,171-193,203-222,270-292,307-324,337-356,361-383,396-418,428-450
C18H9.5 12 31-53,82-104,111-133,137-159,171-193,203-222,270-292,307-324,337-356,361-383,396-418,428-450
SNAP00000038938 8 17-39,43-65,77-99,109-128,204-223,228-250,263-285,295-317
GENEFINDER00000038945 12 20-42,71-93,100-122,126-148,160-182,192-211,259-281,296-313,326-345,350-372,385-407,417-439
Sequence
Target Sequence 
>C. ELEGANS:192648_AT
tccatatttcttcgcggcaattgtcaaatttgccgcaggaccagtaactgataaattggc
tcatatcagtgaaagaaccagacttttcatttttgcattgattcctcaattagtgatggc
aattggatatttaataatgtcatttactgatcacgtgattatcgctcagctggcatatac
aatttcagttattttggcaggattgaatgttattggaatggttaaatgtgcacaaatagt
tgcagaaaaacatttaacattgataatggcagtaatatcaatgagctcatgggtttctgc
atttattcttccaattgttattggagttatatgtcctacaaattcgcatgccgagtggtc
cagattctatctttttgtagctttcttcgttgtttgtactaatctaccattcccgttttt
ggcacgagttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATATTTCTTCGCGGCAATTGTC 417 591 939 Antisense
AATTTGCCGCAGGACCAGTAACTGA 678 173 965 Antisense
GAACCAGACTTTTCATTTTTGCATT 515 345 1013 Antisense
TCACGTGATTATCGCTCAGCTGGCA 389 625 1089 Antisense
GTTTCTGCATTTATTCTTCCAATTG 219 451 1231 Antisense
ATGTCCTACAAATTCGCATGCCGAG 187 49 1269 Antisense
GCATGCCGAGTGGTCCAGATTCTAT 44 311 1284 Antisense
GATTCTATCTTTTTGTAGCTTTCTT 24 433 1301 Antisense
GTAGCTTTCTTCGTTGTTTGTACTA 616 457 1315 Antisense
GTTTGTACTAATCTACCATTCCCGT 643 449 1330 Antisense
CATTCCCGTTTTTGGCACGAGTTAG 697 207 1346 Antisense
Sequence Source Affymetrix Proprietary Database