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[192647_at]

Description F39H2.2 /REP_DB=WormBase Gene ID /WP=CE16017 /GEN=cyp-14 /TR=O18161 /GB=CAB10726.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=peptidylprolyl isomerase
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 83      6grp_total > 75      4grp_total > 52      6grp_cgc > 67      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 396
(2.8)
P 		400.3
(3)
P 		333.3
(-0.4)
P 		281.4
(-3)
P 		119
B 338.9
(-3)
P 		440.4
(3)
P 		432.4
(2.5)
P 		354.3
(-2.1)
P 		102
C 462.6
(3)
P 		405.7
(-0.6)
P 		368.1
(-3)
P 		373.4
(-2.7)
P 		95
avr 399.2
(1.8) 		415.5
(3) 		377.9
(0.1) 		336.4
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 336.6
(-3)
P 		415.2
(-1.1)
P 		498.6
(1)
P 		582.5
(3)
P 		402.2
(-1.4)
P 		574.4
(2.8)
P 		246
B 454.9
(-1.2)
P 		406
(-3)
P 		571.3
(3)
P 		540.5
(1.9)
P 		568.9
(2.9)
P 		558.6
(2.5)
P 		165
C 430
(-0.5)
P 		447.5
(0.5)
P 		382.9
(-3)
P 		463.6
(1.4)
P 		472.5
(1.8)
P 		493.8
(3)
P 		111
avr 407.2
(-3) 		422.9
(-2.3) 		484.3
(0.4) 		528.9
(2.4) 		481.2
(0.3) 		542.3
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 144.2
(3)
P 		86.9
(-0.3)
P 		87.1
(-0.3)
P 		41.2
(-3)
P 		103
B 108.1
(2.9)
P 		108.8
(3)
P 		100.2
(1.5)
P 		75.5
(-3)
P 		33
C 153.1
(3)
P 		116.6
(0.6)
P 		128.3
(1.3)
P 		63
(-3)
P 		90
avr 135.1
(3) 		104.1
(0.5) 		105.2
(0.6) 		59.9
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 62
(-3)
P 		147.7
(3)
P 		108.6
(0.3)
P 		147.7
(3)
P 		121.4
(1.2)
P 		139.9
(2.5)
P 		86
B 158.3
(-1.6)
P 		135.1
(-3)
P 		138.7
(-2.8)
P 		143.1
(-2.5)
P 		231.2
(3)
P 		208.3
(1.6)
P 		96
C 159.4
(2.5)
P 		136.6
(0.6)
P 		97.5
(-2.6)
P 		93.2
(-3)
P 		152.9
(2)
P 		165.3
(3)
P 		72
avr 126.6
(-1.8) 		139.8
(-0.3) 		114.9
(-3) 		128
(-1.6) 		168.5
(2.7) 		171.2
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1371
Sequence Type Exemplar sequence
Representative Public ID F39H2.2 NCBI
Target Description F39H2.2 /REP_DB=WormBase Gene ID /WP=CE16017 /GEN=cyp-14 /TR=O18161 /GB=CAB10726.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=peptidylprolyl isomerase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059942(10), NM_182005(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059942 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-14) (cyn-14) mRNA, complete cds. 10/11 None
NM_182005 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-14) (cyn-14) mRNA, complete cds. 10/11 None
SNAP00000006543 ENSEMBL cdna:SNAP chromosome:CEL140:I:8657890:8659714:1 11/11 None
GENEFINDER00000006548 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8657890:8659714:1 11/11 None
F39H2.2a ENSEMBL cdna:known chromosome:CEL140:I:8654576:8659842:1 gene:F39H2.2 10/11 A 
F39H2.2b ENSEMBL cdna:known chromosome:CEL140:I:8656998:8659714:1 gene:F39H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8654506-8659464(+) 100.0 100.0
Public Domain and Genome References
Ensembl F39H2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03088 Hypothetical protein F39H2.2a [Caenorhabditis elegans] emb|CAB10726.2| Hypothetical protein F39H2.2a [Caenorhabditis elegans] ref|NP_492343.2| CYclophyliN family member (cyn-14) [Caenorhabditis elegans] 0.0
blast CAE67083 Hypothetical protein CBG12494 [Caenorhabditis briggsae] 1.0E-175
blast CAD56584 Hypothetical protein F39H2.2b [Caenorhabditis elegans] ref|NP_871805.1| CYclophyliN family member (cyn-14) [Caenorhabditis elegans] 1.0E-159
blast CAB03088 Hypothetical protein F39H2.2a [Caenorhabditis elegans] emb|CAB10726.2| Hypothetical protein F39H2.2a [Caenorhabditis elegans] ref|NP_492343.2| CYclophyliN family member (cyn-14) [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 2.0E-14
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.9E-16
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.9E-16
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 3.5E-22
Sequence
Target Sequence 
>C. ELEGANS:192647_AT
cgatctccatctcctacttatgagatgcttactgatcaaattgctctcgatgaaaaagaa
gacgaagacgagggaaaaactgcagaagagattgctgaagagctgcaacaaagagaaatg
gctgaacaagctcaaattcttgaaatggtcggagacttgaaagatgctgatgaagttcca
ccggaaaatgtgttgtttgtttgcaaattgaatccagttacaaccgatgaagatctcgag
attattttctctcgattcggaaaaattaacaactgcgagattgttcgagaccgtcgcagt
ggtgattctcttcaatacgcgttcattgagtttgacaatgcgaaaagctgtgagcaagct
ttctttaaaatggacaatgttcttattgatgatcgacgaattcatgttgatttctcacaa
tctgtctctcaaaattacaagtacaagcccaaatcacagcaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCTCCATCTCCTACTTATGAGA 508 249 541 Antisense
GATGCTTACTGATCAAATTGCTCTC 623 413 564 Antisense
ATGCTGATGAAGTTCCACCGGAAAA 410 41 704 Antisense
ATTGAATCCAGTTACAACCGATGAA 91 3 747 Antisense
GAGATTATTTTCTCTCGATTCGGAA 627 395 778 Antisense
ACTGCGAGATTGTTCGAGACCGTCG 335 97 812 Antisense
AGACCGTCGCAGTGGTGATTCTCTT 382 71 828 Antisense
GTGATTCTCTTCAATACGCGTTCAT 380 485 842 Antisense
GACGAATTCATGTTGATTTCTCACA 245 381 935 Antisense
ATTTCTCACAATCTGTCTCTCAAAA 235 17 950 Antisense
GTACAAGCCCAAATCACAGCAACAA 134 461 981 Antisense
Sequence Source Affymetrix Proprietary Database