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[192646_at] von Willebrand factor type A domain

Description H13N06.2 /REP_DB=WormBase Gene ID /WP=CE18813 /TR=Q9XTQ9 /GB=CAB17068.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster 6grp_total > 12      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 38
(-1.4)
A 		33.6
(-2)
A 		74
(3)
P 		25.2
(-3)
A 		49
B 50.4
(1.6)
P 		53.2
(2)
A 		61.5
(3)
P 		13.8
(-3)
A 		48
C 23.2
(-3)
A 		60.2
(3)
A 		56.8
(2.4)
P 		55.2
(2.2)
A 		37
avr 37.2
(-1.9) 		49
(0.2) 		64.1
(3) 		31.4
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 85.7
(2.3)
P 		93.9
(3)
P 		61.3
(0.1)
P 		54.9
(-0.4)
P 		66.5
(0.6)
P 		26
(-3)
A 		68
B 73.5
(0.2)
P 		126
(3)
P 		68.5
(-0.1)
P 		78.4
(0.5)
P 		72
(0.1)
P 		13
(-3)
A 		113
C 59.8
(0.2)
P 		104.2
(3)
P 		89.9
(2.1)
A 		10.6
(-3)
A 		63.3
(0.4)
P 		22.8
(-2.2)
A 		94
avr 73
(0.6) 		108
(3) 		73.2
(0.6) 		48
(-1.1) 		67.3
(0.2) 		20.6
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.8
(0.9)
A 		7.3
(-1.6)
A 		19.3
(3)
P 		3.7
(-3)
A 		16
B 16.1
(3)
P 		13.1
(1.6)
A 		14.2
(2.1)
P 		3
(-3)
A 		13
C 7.7
(-3)
A 		17.3
(1.8)
A 		19.8
(3)
P 		9.3
(-2.2)
A 		12
avr 12.5
(0.5) 		12.6
(0.5) 		17.8
(3) 		5.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 15.8
(-0.9)
P 		33.4
(3)
P 		13.3
(-1.5)
P 		13.9
(-1.3)
P 		20.1
(0.1)
P 		6.3
(-3)
A 		27
B 25.6
(0.4)
P 		41.9
(3)
P 		16.6
(-1.1)
P 		20.8
(-0.4)
P 		29.3
(1)
P 		4.8
(-3)
A 		37
C 22.2
(1.1)
P 		31.8
(3)
P 		22.9
(1.2)
A 		2.1
(-3)
A 		20.5
(0.7)
P 		7.6
(-1.9)
A 		30
avr 21.2
(0.1) 		35.7
(3) 		17.6
(-0.7) 		12.3
(-1.8) 		23.3
(0.5) 		6.2
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17676
Sequence Type Exemplar sequence
Representative Public ID H13N06.2 NCBI
Target Description H13N06.2 /REP_DB=WormBase Gene ID /WP=CE18813 /TR=Q9XTQ9 /GB=CAB17068.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078157 NCBI Caenorhabditis elegans H13N06.2 (H13N06.2) mRNA, complete cds. 11/11 None
SNAP00000006577 ENSEMBL cdna:SNAP chromosome:CEL140:X:15488038:15491408:1 9/11 None
GENEFINDER00000006589 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15488038:15491680:1 11/11 None
H13N06.2 ENSEMBL cdna:known chromosome:CEL140:X:15488038:15491825:1 gene:H13N06.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15488037-15491680(+) 100.0 100.0
Public Domain and Genome References
Gene Title von Willebrand factor type A domain
Ensembl H13N06.2
Entrez Gene 181636 Entrez gene
SwissProt Q9XTQ9 EMBL-EBI
WormBase CE35570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB17068 Hypothetical protein H13N06.2 [Caenorhabditis elegans] ref|NP_510558.2| H13N06.2 [Caenorhabditis elegans] 0.0
blast CAE63320 Hypothetical protein CBG07711 [Caenorhabditis briggsae] 1.0E-158
blast CAE63320 Hypothetical protein CBG07711 [Caenorhabditis briggsae] 1.0E-156
blast CAE63320 Hypothetical protein CBG07711 [Caenorhabditis briggsae] 1.0E-142
blast CAE69342 Hypothetical protein CBG15420 [Caenorhabditis briggsae] 9.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.7E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.1E-25
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.7E-29
Sequence
Target Sequence 
>C. ELEGANS:192646_AT
gaaacctggcaaatttgcatccaacaaaaggtgggtggggtgaagaagaatgcaaggaca
ttctcttcctgttggattccagtggaaacgtggtgcaacagtacgagaagcaaaagaagt
atatcgaggaaattgttcgcaagctagaacatccaagacggatggccttgatcacgtttg
ctggcagaacaaggcagaagattgttattccattaccggaagaaccaaatggcaaaaagt
tcatcgagaaattgagaaaagcccgatttttacgtggagtcaccgcggccggagctgcaa
tctctgtcacaacacaatacgtgcttcaaaaatcgagacacgtgcaagttgtagttgtga
cagacggattctcatttgatgacgtggagaaacaatcagaagcattgagagcggtcgttg
gaatggaaacgtttgtgactggcagatatttcccagtggtcaaaaatgtgttgcactcaa
ttggtggagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCTGGCAAATTTGCATCCAAC 307 359 845 Antisense
GGACATTCTCTTCCTGTTGGATTCC 8 527 900 Antisense
TCGCAAGCTAGAACATCCAAGACGG 69 601 981 Antisense
GACGGATGGCCTTGATCACGTTTGC 674 373 1001 Antisense
GCCCGATTTTTACGTGGAGTCACCG 116 285 1105 Antisense
CTGCAATCTCTGTCACAACACAATA 91 239 1139 Antisense
GACAGACGGATTCTCATTTGATGAC 242 369 1203 Antisense
AGAAGCATTGAGAGCGGTCGTTGGA 160 73 1242 Antisense
GGAAACGTTTGTGACTGGCAGATAT 267 527 1269 Antisense
TGGCAGATATTTCCCAGTGGTCAAA 667 545 1284 Antisense
GTGTTGCACTCAATTGGTGGAGCAG 517 483 1312 Antisense
Sequence Source Affymetrix Proprietary Database