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[192643_at] phosphatidylcholine transfer protein

Description C06H2.2 /REP_DB=WormBase Gene ID /WP=CE05234 /TR=Q17764 /GB=CAA99768.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phosphatidylcholine transfer protein
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 55      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 649.2
(3)
P 		457.4
(-3)
P 		460.4
(-2.9)
P 		463.9
(-2.8)
P 		192
B 602.2
(3)
P 		531.1
(-0.6)
P 		482.4
(-3)
P 		487.9
(-2.7)
P 		120
C 703.4
(3)
P 		633.2
(1.5)
P 		565.8
(0)
P 		426.1
(-3)
P 		277
avr 651.6
(3) 		540.6
(-0.5) 		502.9
(-1.6) 		459.3
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 333.1
(-1)
P 		269.4
(-1.9)
P 		614.8
(3)
P 		188.6
(-3)
P 		228.8
(-2.4)
P 		367.2
(-0.5)
P 		426
B 477
(0.4)
P 		378.5
(-0.8)
P 		452.5
(0.1)
P 		426
(-0.2)
P 		183
(-3)
P 		707.3
(3)
P 		524
C 258.4
(-1.2)
P 		360.8
(0.1)
P 		371.3
(0.2)
P 		284.4
(-0.9)
P 		118.1
(-3)
P 		594.4
(3)
P 		476
avr 356.2
(-0.2) 		336.2
(-0.5) 		479.5
(1.8) 		299.7
(-1.1) 		176.6
(-3) 		556.3
(3) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 236.4
(3)
P 		99.3
(-1.9)
P 		120.4
(-1.1)
P 		67.9
(-3)
P 		169
B 192
(3)
P 		131.2
(-1.1)
P 		111.8
(-2.5)
P 		104
(-3)
P 		88
C 232.9
(3)
P 		182
(1.1)
P 		197.2
(1.7)
P 		71.8
(-3)
P 		161
avr 220.4
(3) 		137.5
(-0.6) 		143.1
(-0.3) 		81.2
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 61.4
(-2.1)
P 		95.8
(0.3)
P 		133.9
(3)
P 		47.8
(-3)
P 		69.1
(-1.5)
P 		89.4
(-0.1)
P 		86
B 166
(-0.1)
P 		126
(-1.4)
P 		109.9
(-1.9)
P 		112.8
(-1.8)
P 		74.4
(-3)
P 		263.7
(3)
P 		189
C 95.8
(-0.9)
P 		110.1
(-0.3)
P 		94.5
(-0.9)
P 		57.2
(-2.3)
P 		38.2
(-3)
P 		199
(3)
P 		161
avr 107.7
(-0.7) 		110.6
(-0.6) 		112.8
(-0.5) 		72.6
(-2.4) 		60.6
(-3) 		184
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12783
Sequence Type Exemplar sequence
Representative Public ID C06H2.2 NCBI
Target Description C06H2.2 /REP_DB=WormBase Gene ID /WP=CE05234 /TR=Q17764 /GB=CAA99768.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phosphatidylcholine transfer protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073429 NCBI Caenorhabditis elegans C06H2.2 (C06H2.2) mRNA, complete cds. 11/11 None
SNAP00000033417 ENSEMBL cdna:SNAP chromosome:CEL140:V:11127663:11129468:1 9/11 None
GENEFINDER00000033424 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11127663:11129468:1 9/11 None
C06H2.2 ENSEMBL cdna:known chromosome:CEL140:V:11127810:11129892:1 gene:C06H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11127851-11129468(+) 93.47 100.0
Public Domain and Genome References
Gene Title phosphatidylcholine transfer protein
Ensembl C06H2.2
Entrez Gene 179542 Entrez gene
SwissProt Q17764 EMBL-EBI
WormBase CE36098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99768 Hypothetical protein C06H2.2 [Caenorhabditis elegans] ref|NP_505830.2| C06H2.2 [Caenorhabditis elegans] 0.0
blast CAE75173 Hypothetical protein CBG23110 [Caenorhabditis briggsae] 1.0E-151
blast CAA99768 Hypothetical protein C06H2.2 [Caenorhabditis elegans] ref|NP_505830.2| C06H2.2 [Caenorhabditis elegans] 1.0E-148
blast CAE75173 Hypothetical protein CBG23110 [Caenorhabditis briggsae] 1.0E-141
blast XP_238280 PREDICTED: similar to START domain containing 7 [Rattus norvegicus] 6.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 2.2E-55
Pfam IPR002913 EMBL-EBI Lipid-binding START 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:192643_AT
tgggtatctaagtttccatatccaatgtatccgagagaatatgtttatgtaagacgaaca
tgggtgtcagaagacgaaaaatatgcagttttagatagcgaatcagttcaacctgaggta
agtatttgtaacttacgaaaaatcttgaataaaattgtaaaaataggtgtttccatcaat
ttcggagtcaaatgtccgaaggctaacattcctcgttacgtgtataattggatggttaac
aaaggtggtccttattttttgagacaagttcacaaggctgctcgtgaaattgagagtagc
ggacgagaagtacgatctgccactgagaaagcgcttttgagaaaaaacgatcgtgttctg
cagcgtcaaaccaaagaaaatgaagaaaaggaaaagaaacggaatgaagaagaaacgaaa
ctcaataatcaagaaaatgaaggagaaaaaaaacttgaaaaaccacaaaaagctcgttcc
acaactgcttcaacctccttcgtattgcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTATCTAAGTTTCCATATCCAA 536 553 664 Antisense
GTTTCCATATCCAATGTATCCGAGA 200 451 675 Antisense
AAATAGGTGTTTCCATCAATTTCGG 22 115 824 Antisense
AAGGCTAACATTCCTCGTTACGTGT 617 159 862 Antisense
GGTGGTCCTTATTTTTTGAGACAAG 576 499 907 Antisense
GAGACAAGTTCACAAGGCTGCTCGT 355 393 924 Antisense
GCGGACGAGAAGTACGATCTGCCAC 636 293 962 Antisense
GATCTGCCACTGAGAAAGCGCTTTT 54 419 977 Antisense
AAACGATCGTGTTCTGCAGCGTCAA 584 125 1008 Antisense
AAAAAGCTCGTTCCACAACTGCTTC 672 129 1130 Antisense
TTCAACCTCCTTCGTATTGCAATCA 320 685 1152 Antisense
Sequence Source Affymetrix Proprietary Database