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[192636_at] haloacid dehalogenase-like hydrolase

Description F37H8.3 /REP_DB=WormBase Gene ID /WP=CE15995 /TR=O17860 /GB=CAB04344.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=haloacid dehalogenase-like hydrolase
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 23      6grp_total > 33      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1921
1 2 3 4 range
A 2374.9
(3)
P 		762.3
(-2)
P 		455.6
(-3)
P 		1774
(1.1)
P 		1919
B 2264.7
(3)
P 		770.7
(-2)
P 		453.8
(-3)
P 		1875.7
(1.7)
P 		1811
C 2340.4
(3)
P 		892.9
(-1.8)
P 		535.9
(-3)
P 		1910.2
(1.6)
P 		1805
avr 2326.7
(3) 		808.6
(-1.9) 		481.8
(-3) 		1853.3
(1.5) 		1845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2766
1 2 3 4 5 6 range
A 2773
(0.7)
P 		2398.9
(-0.1)
P 		3812.2
(3)
P 		2165
(-0.6)
P 		1081.5
(-2.9)
P 		1052.5
(-3)
P 		2760
B 3167.7
(2.6)
P 		2399.9
(0.5)
P 		3305.2
(3)
P 		1909.6
(-0.8)
P 		1204.6
(-2.8)
P 		1120.7
(-3)
P 		2185
C 2857.8
(3)
P 		2244.8
(1)
P 		2371.7
(1.4)
P 		2263.3
(1)
P 		1046.5
(-3)
P 		1326.5
(-2.1)
P 		1811
avr 2932.8
(2.3) 		2347.9
(0.6) 		3163
(3) 		2112.6
(-0.1) 		1110.9
(-3) 		1166.6
(-2.8) 		2052
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 864.7
(3)
P 		165.5
(-2.6)
P 		119.1
(-3)
P 		259.7
(-1.9)
P 		746
B 722.2
(3)
P 		190.3
(-2.2)
P 		105.2
(-3)
P 		399.7
(-0.1)
P 		617
C 774.7
(3)
P 		256.7
(-2.3)
P 		186.8
(-3)
P 		322.1
(-1.6)
P 		588
avr 787.2
(3) 		204.2
(-2.4) 		137
(-3) 		327.2
(-1.2) 		650

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 846
1 2 3 4 5 6 range
A 511.2
(-0.4)
P 		853.2
(3)
P 		830.2
(2.8)
P 		549.1
(-0.1)
P 		326.4
(-2.3)
P 		256.3
(-3)
P 		597
B 1102.2
(3)
P 		798.8
(0.3)
P 		802.6
(0.4)
P 		505.8
(-2.2)
P 		489.4
(-2.4)
P 		417.9
(-3)
P 		684
C 1059.3
(3)
P 		685
(-0.1)
P 		603.6
(-0.8)
P 		455.1
(-2)
P 		338.6
(-3)
P 		444.1
(-2.1)
P 		721
avr 890.9
(3) 		779
(1.7) 		745.5
(1.3) 		503.3
(-1.5) 		384.8
(-2.9) 		372.8
(-3) 		518
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3163
Sequence Type Exemplar sequence
Representative Public ID F37H8.3 NCBI
Target Description F37H8.3 /REP_DB=WormBase Gene ID /WP=CE15995 /TR=O17860 /GB=CAB04344.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=haloacid dehalogenase-like hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063993 NCBI Caenorhabditis elegans F37H8.3 (F37H8.3) mRNA, complete cds. 11/11 None
SNAP00000006625 ENSEMBL cdna:SNAP chromosome:CEL140:II:11181573:11182942:1 11/11 None
GENEFINDER00000006634 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11181573:11182942:1 11/11 None
F37H8.3 ENSEMBL cdna:known chromosome:CEL140:II:11181566:11183047:1 gene:F37H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11181569-11182939(+) 100.0 100.0
Public Domain and Genome References
Gene Title haloacid dehalogenase-like hydrolase
Ensembl F37H8.3
Entrez Gene 174706 Entrez gene
SwissProt O17860 EMBL-EBI
WormBase CE35870 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04344 Hypothetical protein F37H8.3 [Caenorhabditis elegans] ref|NP_496394.2| F37H8.3 [Caenorhabditis elegans] 1.0E-128
blast CAE59555 Hypothetical protein CBG02952 [Caenorhabditis briggsae] 1.0E-113
blast XP_543398 PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 10 [Canis familiaris] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.1E-23
Sequence
Target Sequence 
>C. ELEGANS:192636_AT
atgggttgccatgtcaagatcacttggacttcctgatgatgctgtacacagtgaatctgt
cggaattgagttttcgcagtggttgggacccgatagaagtcttttcttgggtacattgac
tgtcgacgatttggaaggaggtctctttttgcagtatttgaagcataaggtaggcgagta
tggaaacaagctgactgacaacgttgtgataaaaccattcaccgagtgccttcgtggaga
aaatgttaaaattcacaaaaatatgcaaaaaaccgtggaaattcttcacaagaagggctt
caaaaccgccatgctgacaaacaacatgttcttagataaggagcacaaggaaaccagact
tccatgcgatttgacacatttcgatgaagttgtagaatcttgtttggagcatctcatgaa
accagacgctcgattttatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTTGCCATGTCAAGATCACTT 153 51 93 Antisense
AAGATCACTTGGACTTCCTGATGAT 508 155 108 Antisense
TGAGTTTTCGCAGTGGTTGGGACCC 549 549 159 Antisense
GGGACCCGATAGAAGTCTTTTCTTG 693 493 177 Antisense
TCTTGGGTACATTGACTGTCGACGA 627 617 197 Antisense
GGAGGTCTCTTTTTGCAGTATTTGA 176 517 229 Antisense
ATTCACCGAGTGCCTTCGTGGAGAA 663 9 309 Antisense
AAGGGCTTCAAAACCGCCATGCTGA 563 159 385 Antisense
GAAACCAGACTTCCATGCGATTTGA 426 359 442 Antisense
GGAGCATCTCATGAAACCAGACGCT 317 521 498 Antisense
GAAACCAGACGCTCGATTTTATCAT 491 357 510 Antisense
Sequence Source Affymetrix Proprietary Database