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[192629_s_at] guanine-nucleotide releasing factor

Description F07C3.4 /REP_DB=WormBase Gene ID /WP=CE07026 /TR=Q19149 /GB=AAG24027.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=guanine-nucleotide releasing factor
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 67      4grp_total > 05      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 665.4
(-0.6)
P 		379.4
(-3)
P 		417
(-2.7)
P 		1087
(3)
P 		708
B 669.5
(-0.5)
P 		409.6
(-3)
P 		452.6
(-2.6)
P 		1037.6
(3)
P 		628
C 681.3
(0.2)
P 		388
(-2.6)
P 		351.7
(-3)
P 		966.7
(3)
P 		615
avr 672.1
(-0.4) 		392.3
(-3) 		407.1
(-2.9) 		1030.4
(3) 		638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 577.6
(-2.3)
P 		726.5
(-1)
P 		503.7
(-3)
P 		699.2
(-1.2)
P 		720.9
(-1)
P 		1164
(3)
P 		660
B 657.5
(-0.9)
P 		711.6
(-0.1)
P 		516.9
(-3)
P 		708.8
(-0.2)
P 		601.9
(-1.8)
P 		925.1
(3)
P 		408
C 590.1
(-2.4)
P 		657.4
(-0.6)
P 		680.9
(-0)
P 		781.5
(2.7)
P 		567.6
(-3)
P 		794.3
(3)
P 		227
avr 608.4
(-2.4) 		698.5
(-1) 		567.2
(-3) 		729.8
(-0.5) 		630.1
(-2) 		961.1
(3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 242.3
(3)
P 		82.3
(-3)
P 		109
(-2)
P 		159.1
(-0.1)
P 		160
B 213.5
(2.6)
P 		101.2
(-3)
P 		104.9
(-2.8)
P 		221.1
(3)
P 		120
C 225.5
(3)
P 		111.5
(-3)
P 		122.6
(-2.4)
P 		163
(-0.3)
P 		114
avr 227.1
(3) 		98.3
(-3) 		112.2
(-2.4) 		181.1
(0.9) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 106.5
(-3)
P 		258.4
(2.2)
P 		109.7
(-2.9)
P 		177.3
(-0.6)
P 		217.5
(0.8)
P 		283.4
(3)
P 		177
B 228.8
(-0.2)
P 		236.9
(0)
P 		125.5
(-3)
P 		187.7
(-1.3)
P 		244.5
(0.3)
P 		345
(3)
P 		220
C 218.7
(0.4)
P 		200.6
(-0.6)
P 		173.3
(-2.1)
P 		157.2
(-3)
P 		183.7
(-1.5)
P 		265.9
(3)
P 		109
avr 184.7
(-1.2) 		232
(0.6) 		136.2
(-3) 		174.1
(-1.6) 		215.2
(-0.1) 		298.1
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192629_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11956
Sequence Type Exemplar sequence
Representative Public ID F07C3.4 NCBI
Target Description F07C3.4 /REP_DB=WormBase Gene ID /WP=CE07026 /TR=Q19149 /GB=AAG24027.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=guanine-nucleotide releasing factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072991 NCBI Caenorhabditis elegans Gut granule LOss family member (glo-4) (glo-4) mRNA, complete cds. 11/11 None
SNAP00000009705 ENSEMBL cdna:SNAP chromosome:CEL140:V:9237571:9241183:-1 11/11 None
GENEFINDER00000009730 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9237571:9245749:-1 11/11 None
F07C3.4 ENSEMBL cdna:known chromosome:CEL140:V:9237209:9245749:-1 gene:F07C3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9237570-9243122(-) 100.0 100.0
Public Domain and Genome References
Gene Title guanine-nucleotide releasing factor
Gene Symbol glo-4
Ensembl F07C3.4
Entrez Gene 179306 Entrez gene
SwissProt Q5DX34 EMBL-EBI
WormBase CE38062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505392 Gut granule LOss family member (glo-4) [Caenorhabditis elegans] gb|AAW88404.1| Hypothetical protein F07C3.4 [Caenorhabditis elegans] sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase regulator homolog 0.0
blast CAE72137 Hypothetical protein CBG19235 [Caenorhabditis briggsae] 0.0
blast CAE72138 Hypothetical protein CBG19236 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR000408 EMBL-EBI Regulator of chromosome condensation, RCC1 2.9E-7
Pfam IPR000408 EMBL-EBI Regulator of chromosome condensation, RCC1 2.9E-7
Pfam IPR000408 EMBL-EBI Regulator of chromosome condensation, RCC1 2.9E-7
Sequence
Target Sequence 
>C. ELEGANS:192629_S_AT
tttccaagcatctgtacagcccgatcgaaggaaaatgtaatggaagcatcatagaagacg
aaccaagaaacgggaaaattcagaaacaaaataagtacgatggagaagatggaccgcttt
gcacaacaacagctcttgttcatttaattgctggtgatgtcaaaagagcgattcgaatga
ttgaatggctgaagacggatagttcgacatgcgagaaatcactgatggttctttcatcac
ttgtatgggaagttatggcaaatcatgaagatgtacaatcacgtgaagccttatctgctg
cctttcgtcatgttcctatgtctgattccatgcgcaaaggaaaacaaattgctcaattgt
ggccggctgtttggaatgacgaacgtgtacaaagctctttgagcattgacgaaaaaatcg
ctatgcttgacggatttacgagtgcttcaaaaccagttagctgtcctacgatcccatctt
cttcacttgaagtttcttccaaaattcgtgtctatgctcaatgtgctcatgctgaacctg
cagccgttggttctccaccagaatgctctacttgtcttgacgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCAAGCATCTGTACAGCCCGAT 42 669 2684 Antisense
GACCGCTTTGCACAACAACAGCTCT 117 383 2795 Antisense
TCACGTGAAGCCTTATCTGCTGCCT 424 627 2962 Antisense
TGTTCCTATGTCTGATTCCATGCGC 464 561 2994 Antisense
CAAATTGCTCAATTGTGGCCGGCTG 418 191 3028 Antisense
GTGGCCGGCTGTTTGGAATGACGAA 239 493 3042 Antisense
AAACCAGTTAGCTGTCCTACGATCC 393 123 3133 Antisense
GATCCCATCTTCTTCACTTGAAGTT 233 417 3153 Antisense
AATTCGTGTCTATGCTCAATGTGCT 561 177 3186 Antisense
ATGTGCTCATGCTGAACCTGCAGCC 263 49 3204 Antisense
GAATGCTCTACTTGTCTTGACGAAT 271 331 3244 Antisense
Sequence Source Affymetrix Proprietary Database