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[192627_at] dihydroxyvitamin D3-induced protein

Description R06B9.4 /REP_DB=WormBase Gene ID /WP=CE16302 /TR=O17983 /GB=CAB05788.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 02      4grp_high_8_8 > 45      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 487.8
(-3)
P 		896.2
(3)
P 		730.1
(0.6)
P 		552.1
(-2.1)
P 		408
B 474.6
(-2.5)
P 		767.5
(3)
P 		686.8
(1.5)
P 		445.3
(-3)
P 		322
C 580.6
(-3)
P 		717.8
(3)
P 		701.4
(2.3)
P 		583.8
(-2.9)
P 		137
avr 514.3
(-3) 		793.8
(3) 		706.1
(1.1) 		527.1
(-2.7) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 806
(3)
P 		492.6
(-0.2)
P 		686.3
(1.8)
P 		451.1
(-0.6)
P 		209.1
(-3)
P 		241.8
(-2.7)
P 		597
B 810.6
(3)
P 		656.8
(1.3)
P 		639
(1.1)
P 		467.4
(-0.8)
P 		268.4
(-3)
P 		301.4
(-2.6)
P 		542
C 666.4
(3)
P 		649.5
(2.8)
P 		640
(2.6)
P 		521.5
(1)
P 		227
(-3)
P 		282.8
(-2.2)
P 		439
avr 761
(3) 		599.6
(1.2) 		655.1
(1.8) 		480
(-0.2) 		234.8
(-3) 		275.3
(-2.5) 		526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 177.6
(2.1)
P 		194.5
(3)
P 		190.9
(2.8)
P 		80.8
(-3)
P 		114
B 151.4
(0.6)
P 		189.6
(3)
P 		159.1
(1.1)
P 		94.9
(-3)
P 		95
C 192.2
(0.9)
P 		206.4
(1.4)
P 		244.4
(3)
P 		98.4
(-3)
P 		146
avr 173.7
(1.6) 		196.8
(2.9) 		198.1
(3) 		91.4
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 148.6
(1.6)
P 		175.2
(3)
P 		149.5
(1.7)
P 		114.4
(-0.1)
P 		63.1
(-2.8)
P 		58.9
(-3)
P 		116
B 282
(3)
P 		218.6
(0.8)
P 		155.2
(-1.4)
P 		123.8
(-2.5)
P 		109
(-3)
P 		112.4
(-2.9)
P 		173
C 247
(3)
P 		198.2
(1.3)
P 		162.9
(0.1)
P 		104.9
(-1.9)
P 		73.4
(-3)
P 		94.7
(-2.3)
P 		174
avr 225.9
(3) 		197.3
(1.8) 		155.9
(0.1) 		114.4
(-1.6) 		81.8
(-3) 		88.7
(-2.7) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3630
Sequence Type Exemplar sequence
Representative Public ID R06B9.4 NCBI
Target Description R06B9.4 /REP_DB=WormBase Gene ID /WP=CE16302 /TR=O17983 /GB=CAB05788.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064480 NCBI Caenorhabditis elegans R06B9.4 (R06B9.4) mRNA, complete cds. 11/11 None
SNAP00000002411 ENSEMBL cdna:SNAP chromosome:CEL140:II:13752217:13768300:1 11/11 None
GENEFINDER00000002414 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13752217:13756060:1 11/11 None
R06B9.4 ENSEMBL cdna:known chromosome:CEL140:II:13752217:13756154:1 gene:R06B9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13752213-13756057(+) 98.97 100.0
Public Domain and Genome References
Gene Title dihydroxyvitamin D3-induced protein
Ensembl R06B9.4
Entrez Gene 175021 Entrez gene
SwissProt O17983 EMBL-EBI
WormBase CE16302 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05788 Hypothetical protein R06B9.4 [Caenorhabditis elegans] ref|NP_496881.1| R06B9.4 [Caenorhabditis elegans] 0.0
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 0.0
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 1.0E-174
blast CAE73272 Hypothetical protein CBG20690 [Caenorhabditis briggsae] 1.0E-114
blast CAE73273 Hypothetical protein CBG20691 [Caenorhabditis briggsae] 7.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.1E-34
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 2.4E-45
Pfam IPR000698 EMBL-EBI Arrestin 7.2E-29
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-29
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Sequence
Target Sequence 
>C. ELEGANS:192627_AT
tgaaccggcaaagatccacgtggacaatgttgcggagtactgccactgcctgccgtgcct
gccgacgaggggaaatgtcatttatacgcttcaatctccaaaatgtggttatgtcgcagg
cgagaatgtaattgtgtcaggacaaatcgagaacggaacctcaaaacccatgaaaatcat
cactgcgaaactaacaagaagaatcacatatcgcgaggagctcaaggcaaaagccaacgc
aaagaagaaggctgatggagccgacgggttcaagtcgaagctcgaggagcagatccttga
gacgaaaatcgaacgatgcaatgttccggcgagatccagcaaggatttcgccttctcctt
tgatattccggctgtagtgagcacaattcgttcctcgaggcttctagcggtggagtactt
tgtgacagtctggggagatactggaacgtgtaaccggggaggagtagctgcattgaatat
tatcgttgggaatgttccgctgtttttaggcagctcttcactacccccacgcaaattcgt
cgatggagaagatgcgcagagctggacggtcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCGGCAAAGATCCACGTGGAC 571 361 465 Antisense
CAATGTTGCGGAGTACTGCCACTGC 410 183 489 Antisense
GTCATTTATACGCTTCAATCTCCAA 635 467 541 Antisense
ATGCAATGTTCCGGCGAGATCCAGC 461 43 780 Antisense
GATCCAGCAAGGATTTCGCCTTCTC 383 415 797 Antisense
TCTCCTTTGATATTCCGGCTGTAGT 139 611 818 Antisense
TAGTGAGCACAATTCGTTCCTCGAG 102 655 839 Antisense
GAGGCTTCTAGCGGTGGAGTACTTT 595 405 861 Antisense
TGTTTTTAGGCAGCTCTTCACTACC 538 561 965 Antisense
ACCCCCACGCAAATTCGTCGATGGA 684 89 987 Antisense
GATGCGCAGAGCTGGACGGTCGATA 617 413 1015 Antisense
Sequence Source Affymetrix Proprietary Database