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[192623_at] testis-specific protein TPX-1 like

Description F49E11.9 /REP_DB=WormBase Gene ID /WP=CE05905 /TR=Q20608 /GB=CAA94348.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 83      4grp_total > 27      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 113
(-0.4)
A 		87.6
(-3)
A 		137.8
(2.2)
A 		145.5
(3)
A 		58
B 72.7
(-2.1)
A 		119.5
(3)
A 		79.5
(-1.4)
A 		64.9
(-3)
A 		55
C 90
(-0.2)
A 		153.8
(2.4)
A 		20.8
(-3)
A 		169
(3)
A 		148
avr 91.9
(-1.4) 		120.3
(2.2) 		79.4
(-3) 		126.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1217
1 2 3 4 5 6 range
A 26.8
(-3)
A 		23.3
(-3)
A 		88.5
(-2.6)
A 		719.1
(1.2)
P 		1016.8
(3)
P 		273.2
(-1.5)
P 		994
B 59.9
(-3)
A 		51.9
(-3)
A 		81
(-2.9)
A 		709.3
(0.3)
P 		1234
(3)
P 		391.9
(-1.3)
P 		1182
C 17.2
(-3)
A 		108.7
(-2.3)
A 		58.1
(-2.7)
A 		661.8
(1.8)
P 		816.6
(3)
P 		403.4
(-0.1)
P 		799
avr 34.6
(-3) 		61.3
(-2.8) 		75.9
(-2.7) 		696.7
(1) 		1022.5
(3) 		356.2
(-1) 		988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 41.1
(3)
A 		19
(-3)
A 		36
(1.6)
A 		21.3
(-2.4)
A 		22
B 23.2
(0.6)
A 		29.5
(3)
A 		18.4
(-1.2)
A 		13.8
(-3)
A 		16
C 29.8
(0.7)
A 		44.2
(3)
A 		7.2
(-3)
A 		28.5
(0.5)
A 		37
avr 31.4
(3) 		30.9
(2.7) 		20.5
(-3) 		21.2
(-2.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 4.9
(-3)
A 		8.3
(-2.9)
A 		19.3
(-2.7)
A 		182.4
(0.5)
P 		306.8
(3)
P 		66.5
(-1.8)
P 		302
B 20.8
(-3)
A 		17.3
(-3)
A 		19.7
(-3)
A 		187.9
(-0.9)
P 		501.3
(3)
P 		146.1
(-1.4)
P 		484
C 6.4
(-3)
A 		33.2
(-2.4)
A 		14.8
(-2.8)
A 		133.1
(-0.1)
P 		264.2
(3)
P 		135
(-0)
P 		258
avr 10.7
(-3) 		19.6
(-2.8) 		17.9
(-2.9) 		167.8
(-0.3) 		357.4
(3) 		115.9
(-1.2) 		347
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8451
Sequence Type Exemplar sequence
Representative Public ID F49E11.9 NCBI
Target Description F49E11.9 /REP_DB=WormBase Gene ID /WP=CE05905 /TR=Q20608 /GB=CAA94348.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070101 NCBI Caenorhabditis elegans SCP-Like extracellular protein family member (scl-1) (scl-1) mRNA, complete cds. 11/11 None
SNAP00000011575 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13056361:13057231:1 11/11 None
GENEFINDER00000011586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13056361:13057231:1 11/11 None
F49E11.9 ENSEMBL cdna:known chromosome:CEL140:IV:13056361:13057231:1 gene:F49E11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13056366-13057237(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Gene Symbol scl-1
Ensembl F49E11.9
Entrez Gene 186053 Entrez gene
SwissProt Q20608 EMBL-EBI
WormBase CE05905 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18970_AT allergen V5/Tpx-1-related family protein at
ATH1-121501:254025_AT allergen V5/Tpx-1-related family protein at
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94348 Hypothetical protein F49E11.9 [Caenorhabditis elegans] ref|NP_502502.1| SCP-Like extracellular protein family member (scl-1) [Caenorhabditis elegans] 1.0E-112
blast CAE56328 Hypothetical protein CBG23993 [Caenorhabditis briggsae] 4.0E-76
blast CAA94350 Hypothetical protein F49E11.6 [Caenorhabditis elegans] ref|NP_502499.1| F49E11.6 [Caenorhabditis elegans] 6.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.2E-64
Sequence
Target Sequence 
>C. ELEGANS:192623_AT
ctctgcctcctagcaattggtgtcaatgctcaattcacttcaactggtcaatcaagcatt
gtggatgctcataacaaattgagatccgctattgcaaagagtacctatgttgcgaaggga
accaaaaaagaaccagcaactgatatgaggaaaatggtcgtggattccaccgtagctgcg
tcggctcagaattatgcgaatacgtgcccaactggacactcaaagggaactggatatggg
gaaaatttgtattggtcttggacttctgcggatgttggatccttggattcctatggagaa
atcgccgctgccgcatgggaaaaggaattccaagactttggctggaagtctaacgcaatg
gataccaccctattcaacagtggaataggacacgctactcaaatggcttgggcaaacacc
agctccatcgggtgtggagtcaagaattgtggacgagacgcatcgatgagaaatatgaac
aaaatagctgtagtctgccagtatagtccaccaggaaacactatgggacggccgatttat
aaggaaggaactacgtgttccagctgttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGCCTCCTAGCAATTGGTGTCA 686 231 25 Antisense
TGCTCAATTCACTTCAACTGGTCAA 259 581 51 Antisense
TGGTCGTGGATTCCACCGTAGCTGC 557 551 179 Antisense
GTAGCTGCGTCGGCTCAGAATTATG 488 457 196 Antisense
TATGCGAATACGTGCCCAACTGGAC 433 657 217 Antisense
GTATTGGTCTTGGACTTCTGCGGAT 72 453 273 Antisense
TCGCCGCTGCCGCATGGGAAAAGGA 675 599 326 Antisense
AACGCAATGGATACCACCCTATTCA 373 143 376 Antisense
GCAAACACCAGCTCCATCGGGTGTG 222 317 436 Antisense
TAGTCTGCCAGTATAGTCCACCAGG 656 653 515 Antisense
GGAACTACGTGTTCCAGCTGTTCCG 449 529 571 Antisense
Sequence Source Affymetrix Proprietary Database