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[192622_at]

Description F53H4.1 /REP_DB=WormBase Gene ID /WP=CE11028 /TR=Q93781 /GB=CAB03135.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=excision repair protein ERCC-6 like
Cluster 6grp_total > 61      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 69.8
(-0.7)
A 		79.1
(0.5)
M 		52.4
(-3)
A 		98
(3)
A 		46
B 134
(2.1)
P 		153.6
(3)
P 		64.7
(-1.3)
P 		29.5
(-3)
A 		124
C 106
(1.5)
P 		117.8
(3)
P 		70.4
(-3)
P 		91.9
(-0.3)
A 		47
avr 103.3
(1.5) 		116.8
(3) 		62.5
(-3) 		73.1
(-1.8) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 88.6
(-1.1)
A 		85.8
(-1.4)
P 		71.3
(-3)
P 		78.6
(-2.2)
P 		127
(3)
P 		73.4
(-2.8)
M 		56
B 72.2
(-1.6)
P 		102.1
(0.6)
P 		91.8
(-0.2)
P 		135.7
(3)
P 		55.2
(-2.9)
P 		53.4
(-3)
A 		82
C 106.6
(-0.8)
P 		98.1
(-1.3)
P 		165.6
(3)
P 		150.3
(2)
P 		83.1
(-2.3)
P 		71.7
(-3)
A 		94
avr 89.1
(-0.5) 		95.3
(0.2) 		109.6
(1.7) 		121.5
(3) 		88.4
(-0.6) 		66.2
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 25.4
(3)
A 		17.2
(-1.2)
M 		13.7
(-3)
A 		14.3
(-2.7)
A 		12
B 42.7
(3)
P 		37.9
(2.2)
P 		15
(-1.6)
P 		6.3
(-3)
A 		36
C 35.1
(3)
P 		33.9
(2.6)
P 		24.5
(-0.2)
P 		15.5
(-3)
A 		20
avr 34.4
(3) 		29.7
(1.7) 		17.7
(-1.5) 		12
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.3
(-2.8)
A 		30.5
(0.9)
P 		15.5
(-3)
P 		19.9
(-1.8)
P 		38.3
(3)
P 		17.9
(-2.4)
M 		23
B 25.1
(-1.1)
P 		34
(2.3)
P 		22.3
(-2.1)
P 		35.9
(3)
P 		22.4
(-2.1)
P 		19.9
(-3)
A 		16
C 39.5
(2.1)
P 		29.9
(-1.1)
P 		42.2
(3)
P 		30.2
(-1)
P 		26.9
(-2)
P 		24
(-3)
A 		18
avr 27
(0.5) 		31.5
(3) 		26.7
(0.4) 		28.7
(1.5) 		29.2
(1.7) 		20.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17831
Sequence Type Exemplar sequence
Representative Public ID F53H4.1 NCBI
Target Description F53H4.1 /REP_DB=WormBase Gene ID /WP=CE11028 /TR=Q93781 /GB=CAB03135.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=excision repair protein ERCC-6 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029535 NCBI Caenorhabditis elegans F53H4.6 (F53H4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000026513 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15852852:15856583:-1 11/11 None
SNAP00000026501 ENSEMBL cdna:SNAP chromosome:CEL140:X:15852892:15860518:-1 11/11 None
F53H4.6 ENSEMBL cdna:known chromosome:CEL140:X:15852852:15860518:-1 gene:F53H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15852851-15865829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53H4.6
Entrez Gene 181672 Entrez gene
SwissProt Q86D18 EMBL-EBI
WormBase CE33794 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD89731 Hypothetical protein F53H4.6 [Caenorhabditis elegans] ref|NP_001024706.1| F53H4.6 [Caenorhabditis elegans] 0.0
blast CAB03135 Hypothetical protein F53H4.1 [Caenorhabditis elegans] ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1) [Caenorhabditis elegans] 1.0E-131
blast CAB03135 Hypothetical protein F53H4.1 [Caenorhabditis elegans] ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1) [Caenorhabditis elegans] 1.0E-126
blast CAB03135 Hypothetical protein F53H4.1 [Caenorhabditis elegans] ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1) [Caenorhabditis elegans] 1.0E-125
blast CAE69733 Hypothetical protein CBG16004 [Caenorhabditis briggsae] 1.0E-115
blast CAE69733 Hypothetical protein CBG16004 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 1.3E-6
Pfam IPR000330 EMBL-EBI SNF2 related domain 2.5E-6
Pfam IPR000330 EMBL-EBI SNF2 related domain 2.5E-6
Sequence
Target Sequence 
>C. ELEGANS:192622_AT
cagcttctctcttcaatcattgacacgactcgcttagacacaatcaggacccacttcacc
tcttttcaatatcactctacgaccagtgaccggattaaaagcagagatgttgtgaatcgg
gccgtcagaagtattatacagatcgatagtcgtcttgcgcgctactggaggcagatgtat
catcagatagtcgatgaaccgactttggatccaccaaatcctgaattctacgtggagcca
atgcagatagacccgtattgggaagccgttcatccaatggtacccaggacttctgaccgg
gaagagctcaactttcttgttgcaatggccgtcgatgttcgctctcatatgctgaaatgt
tacggtgaaacggaaaagaagcttcgagaactgtttgtgagaaatgcagaccgttcaaac
ccgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTTCTCTCTTCAATCATTGACA 109 205 4777 Antisense
TGACACGACTCGCTTAGACACAATC 695 569 4797 Antisense
TAGACACAATCAGGACCCACTTCAC 475 651 4811 Antisense
TTCACCTCTTTTCAATATCACTCTA 249 685 4831 Antisense
ACAGATCGATAGTCGTCTTGCGCGC 1 107 4914 Antisense
TCTTGCGCGCTACTGGAGGCAGATG 548 615 4929 Antisense
TCGATGAACCGACTTTGGATCCACC 515 601 4967 Antisense
CAATGGTACCCAGGACTTCTGACCG 651 181 5051 Antisense
TGTTGCAATGGCCGTCGATGTTCGC 709 561 5094 Antisense
CGATGTTCGCTCTCATATGCTGAAA 641 247 5109 Antisense
AAATGCAGACCGTTCAAACCCGATT 310 119 5178 Antisense
Sequence Source Affymetrix Proprietary Database