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[192620_at] Zinc finger, CCHC class (2 domains)

Description K03D3.6 /REP_DB=WormBase Gene ID /WP=CE16212 /TR=O45644 /GB=CAB05243.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, CCHC class (2 domains)
Cluster 6grp_total > 09      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 9.2
(-3)
A 		13.5
(-2.1)
A 		37.1
(3)
A 		33.6
(2.2)
A 		28
B 9.9
(-2.7)
A 		19.4
(-0.3)
A 		8.8
(-3)
A 		32.2
(3)
A 		23
C 42.9
(-0.9)
A 		68.3
(0.7)
A 		7.5
(-3)
A 		106.5
(3)
A 		99
avr 20.7
(-2.6) 		33.7
(-0.6) 		17.8
(-3) 		57.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 8.4
(-2.5)
A 		8
(-2.6)
A 		24
(-0.2)
A 		45.7
(3)
A 		20
(-0.8)
A 		5
(-3)
A 		41
B 73.1
(3)
A 		15.1
(-2.9)
A 		13.7
(-3)
A 		22.4
(-2.1)
A 		18.8
(-2.5)
A 		32.8
(-1.1)
A 		59
C 4
(-3)
A 		12.8
(1)
A 		11.2
(0.3)
A 		13.1
(1.2)
A 		14.4
(1.8)
A 		17.1
(3)
A 		13
avr 28.5
(3) 		12
(-3) 		16.3
(-1.4) 		27.1
(2.5) 		17.7
(-0.9) 		18.3
(-0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.3
(-2.6)
A 		2.9
(-3)
A 		9.7
(3)
A 		4.9
(-1.2)
A 		7
B 3.2
(-1.6)
A 		4.8
(0.4)
A 		2.1
(-3)
A 		6.9
(3)
A 		5
C 14.2
(1.1)
A 		19.7
(3)
A 		2.6
(-3)
A 		18
(2.4)
A 		17
avr 6.9
(-0.5) 		9.1
(2.1) 		4.8
(-3) 		9.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.5
(-2.8)
A 		2.8
(-2.1)
A 		5.2
(-0.7)
A 		11.6
(3)
A 		6
(-0.2)
A 		1.2
(-3)
A 		10
B 25.4
(3)
A 		5
(-2.5)
A 		3.3
(-3)
A 		5.9
(-2.3)
A 		7.6
(-1.8)
A 		12.2
(-0.6)
A 		22
C 1.5
(-3)
A 		3.9
(0.4)
A 		2.9
(-1)
A 		2.6
(-1.4)
A 		4.7
(1.6)
A 		5.7
(3)
A 		4
avr 9.5
(3) 		3.9
(-2.9) 		3.8
(-3) 		6.7
(0.1) 		6.1
(-0.6) 		6.4
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10008
Sequence Type Exemplar sequence
Representative Public ID K03D3.6 NCBI
Target Description K03D3.6 /REP_DB=WormBase Gene ID /WP=CE16212 /TR=O45644 /GB=CAB05243.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, CCHC class (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070539 NCBI Caenorhabditis elegans K03D3.6 (K03D3.6) mRNA, complete cds. 11/11 A 
K03D3.6 ENSEMBL cdna:known chromosome:CEL140:IV:16316585:16318547:1 gene:K03D3.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040347 4/11 Cross Hyb Matching Probes None
GENEFINDER00000040361 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16316590-16318553(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, CCHC class (2 domains)
Ensembl K03D3.6
Entrez Gene 186937 Entrez gene
SwissProt O45644 EMBL-EBI
WormBase CE16212 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05243 Hypothetical protein K03D3.6 [Caenorhabditis elegans] ref|NP_502940.1| K03D3.6 [Caenorhabditis elegans] 0.0
blast AAF99964 Hypothetical protein F49F1.8 [Caenorhabditis elegans] ref|NP_500489.2| F49F1.8 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.2E-5
Sequence
Target Sequence 
>C. ELEGANS:192620_AT
ccccggttccagaaccatcgactgacgacaccgcaaccacctatgcattccgccgtctga
agctgacatccacgcagacgtctacacatcgtgttcccagccgcaccgacaacaagttca
aaggactatgtcactattgtaagaacgcaggtcatatggttagagactgcaggaagaaag
cttttgccgagaaacgcgcaggattaaaggaccaagcttcaatcaacaacgacacacagc
aacggcacccaaaaagaaagacttacaagattcgccttctacagctcgttccaaccagtc
gcacaagtgccgctaccctccgacgtcgaaccagacttgtaatgataattaccgtaaccc
gtgcaggcctgctccgccgaactctctcggcagcgcgcgccacattttgcatttccttcc
ggaacattcttgtctcgtcccgcccttccaccgcaacctgctatataagacgacaattcc
ctcattctaggtcttttcctcgttttgacttgttttgtctccttatctctctctccctct
ttctctgtacttgtttggcaggacattgttccctgagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCGGTTCCAGAACCATCGACTGA 294 261 1085 Antisense
TGAAGCTGACATCCACGCAGACGTC 92 575 1142 Antisense
ACGCAGACGTCTACACATCGTGTTC 49 93 1156 Antisense
GCCGCACCGACAACAAGTTCAAAGG 375 285 1184 Antisense
AGAAAGCTTTTGCCGAGAAACGCGC 410 71 1259 Antisense
GGACCAAGCTTCAATCAACAACGAC 273 521 1293 Antisense
CAACAACGACACACAGCAACGGCAC 448 189 1308 Antisense
CATTCTAGGTCTTTTCCTCGTTTTG 593 215 1567 Antisense
TGACTTGTTTTGTCTCCTTATCTCT 154 571 1590 Antisense
CCTCTTTCTCTGTACTTGTTTGGCA 678 267 1620 Antisense
TGGCAGGACATTGTTCCCTGAGCCA 310 545 1640 Antisense
Sequence Source Affymetrix Proprietary Database