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[192618_at] vesicle associated membrane protein

Description T14D7.3 /REP_DB=WormBase Gene ID /WP=CE13646 /TR=Q94057 /GB=CAB03366.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=vesicle associated membrane protein
Cluster 6grp_total > 98      4grp_total > 26      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4
(-3)
A 		38.5
(3)
A 		11
(-1.8)
A 		35
(2.4)
P 		35
B 5
(-3)
A 		16.9
(1)
A 		5.8
(-2.7)
A 		22.7
(3)
A 		18
C 13.7
(-3)
A 		21.6
(-0.9)
A 		15.7
(-2.5)
A 		36.3
(3)
P 		23
avr 7.6
(-3) 		25.7
(1.6) 		10.8
(-2.2) 		31.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		1.6
(-3)
A 		13.3
(-1.7)
A 		1.4
(-3)
A 		26.3
(-0.2)
A 		54.9
(3)
P 		54
B 10.5
(-1.6)
A 		15.6
(-0.6)
A 		14.9
(-0.8)
A 		3.1
(-3)
A 		34.9
(3)
P 		35
(3)
P 		32
C 2
(-2.9)
A 		4.3
(-2.6)
A 		0.9
(-3)
A 		30.4
(0.2)
A 		55.6
(3)
P 		37.2
(1)
P 		55
avr 4.9
(-3) 		7.2
(-2.6) 		9.7
(-2.2) 		11.6
(-1.9) 		38.9
(2.4) 		42.4
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-3)
A 		8.4
(3)
A 		2.9
(-1.7)
A 		5.1
(0.2)
P 		7
B 1.6
(-2.6)
A 		4.2
(1.9)
A 		1.4
(-3)
A 		4.8
(3)
A 		3
C 4.5
(-3)
A 		6.2
(3)
A 		5.5
(0.5)
A 		6.1
(2.6)
P 		2
avr 2.5
(-3) 		6.3
(3) 		3.3
(-1.7) 		5.3
(1.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.9)
A 		2.9
(-1.8)
A 		0.4
(-3)
A 		8
(0.5)
A 		13.4
(3)
P 		13
B 3.6
(-1.7)
A 		5.2
(-1)
A 		3.6
(-1.7)
A 		0.8
(-3)
A 		14.2
(3)
P 		13.1
(2.5)
P 		13
C 0.7
(-2.8)
A 		1.3
(-2.6)
A 		0.2
(-3)
A 		6.1
(-1)
A 		18
(3)
P 		12.5
(1.1)
P 		18
avr 1.6
(-3) 		2.4
(-2.6) 		2.2
(-2.7) 		2.4
(-2.6) 		13.4
(3) 		13
(2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3806
Sequence Type Exemplar sequence
Representative Public ID T14D7.3 NCBI
Target Description T14D7.3 /REP_DB=WormBase Gene ID /WP=CE13646 /TR=Q94057 /GB=CAB03366.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=vesicle associated membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063486 NCBI Caenorhabditis elegans T14D7.3 (T14D7.3) mRNA, complete cds. 11/11 None
SNAP00000027263 ENSEMBL cdna:SNAP chromosome:CEL140:II:8859061:8859532:-1 11/11 None
GENEFINDER00000027267 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8859061:8860943:-1 11/11 None
T14D7.3 ENSEMBL cdna:known chromosome:CEL140:II:8859061:8859532:-1 gene:T14D7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8859057-8859529(-) 100.0 100.0
Public Domain and Genome References
Gene Title vesicle associated membrane protein
Ensembl T14D7.3
Entrez Gene 188497 Entrez gene
SwissProt Q94057 EMBL-EBI
WormBase CE13646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03366 Hypothetical protein T14D7.3 [Caenorhabditis elegans] ref|NP_495887.1| T14D7.3 [Caenorhabditis elegans] 1.0E-50
blast AAB59178 Synaptobrevin related protein 5 [Caenorhabditis elegans] ref|NP_498790.1| SyNaptoBrevin related family member (snb-5) [Caenorhabditis elegans] sp|P34351|SNB5_CAEEL Synaptobrevin-like protein 2.0E-44
blast AAB59178 Synaptobrevin related protein 5 [Caenorhabditis elegans] ref|NP_498790.1| SyNaptoBrevin related family member (snb-5) [Caenorhabditis elegans] sp|P34351|SNB5_CAEEL Synaptobrevin-like protein 3.0E-44
blast CAE17894 Hypothetical protein ZK795.4 [Caenorhabditis elegans] emb|CAE18062.1| Hypothetical protein ZK795.4 [Caenorhabditis elegans] ref|NP_001023622.1| ZK795.4 [Caenorhabditis elegans] 3.0E-44
blast CAE17894 Hypothetical protein ZK795.4 [Caenorhabditis elegans] emb|CAE18062.1| Hypothetical protein ZK795.4 [Caenorhabditis elegans] ref|NP_001023622.1| ZK795.4 [Caenorhabditis elegans] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001388 EMBL-EBI Synaptobrevin 1.4E-25
Pfam IPR001388 EMBL-EBI Synaptobrevin 1.4E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495887.1 1 79-101
T14D7.3 1 79-101
SNAP00000027263 1 79-101
GENEFINDER00000027267 1 130-152
Sequence
Target Sequence 
>C. ELEGANS:192618_AT
atgattcatcaacaactaccagtgagtcgtattggttgggacgatcaaaagattatgaga
acaagacaggaattgaattcggtgaaaatcatcatgaaggagaacgtgcaaaaaattatg
gagagacagggaaaacttgacgatctcgttgaaagagctcaaaaactcgaggaagcttca
gatgtttacgtcaagtgtgctgtcaagatcaagcgtgagatgagctggaaagccaatgct
attcgtaatggtatcatcgccgtatcaagtgtgtctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTCATCAACAACTACCAGTGA 121 47 13 Antisense
CAACAACTACCAGTGAGTCGTATTG 207 189 22 Antisense
GAGTCGTATTGGTTGGGACGATCAA 12 401 36 Antisense
ACAGGGAAAACTTGACGATCTCGTT 336 99 138 Antisense
TTGACGATCTCGTTGAAAGAGCTCA 514 701 149 Antisense
GAGGAAGCTTCAGATGTTTACGTCA 660 403 181 Antisense
TTACGTCAAGTGTGCTGTCAAGATC 709 679 198 Antisense
GATCAAGCGTGAGATGAGCTGGAAA 421 421 219 Antisense
GAGCTGGAAAGCCAATGCTATTCGT 407 387 234 Antisense
TATTCGTAATGGTATCATCGCCGTA 704 661 252 Antisense
CATCGCCGTATCAAGTGTGTCTGCT 190 211 267 Antisense
Sequence Source Affymetrix Proprietary Database