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[192615_at] transposase HFL1 (D. melanogaster)

Description C10A4.1 /REP_DB=WormBase Gene ID /WP=CE02469 /TR=Q17894 /GB=AAC46515.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase HFL1 (D. melanogaster)
Cluster 6grp_total > 02      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 60.9
(-3)
A 		68.6
(-2.5)
A 		72.3
(-2.3)
A 		154.2
(3)
A 		93
B 85.3
(3)
M 		69.5
(-3)
A 		77.7
(0.1)
A 		80.6
(1.2)
A 		16
C 76
(-0.2)
A 		73.5
(-0.3)
A 		34.6
(-3)
A 		122.6
(3)
A 		88
avr 74.1
(-1.7) 		70.5
(-2.1) 		61.5
(-3) 		119.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 95.5
(3)
A 		78.6
(1.3)
A 		94.7
(2.9)
P 		71.3
(0.6)
A 		91.6
(2.6)
A 		36
(-3)
A 		60
B 68.4
(0.4)
A 		88.4
(3)
A 		43.8
(-2.8)
A 		55.2
(-1.3)
A 		87.8
(2.9)
A 		41.9
(-3)
A 		47
C 55.6
(-1)
A 		108.7
(3)
A 		61
(-0.6)
A 		44.7
(-1.8)
A 		56.8
(-0.9)
A 		28.9
(-3)
A 		80
avr 73.2
(1) 		91.9
(3) 		66.5
(0.3) 		57.1
(-0.7) 		78.7
(1.6) 		35.6
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 22.2
(2.7)
A 		14.9
(-3)
A 		18.9
(0.1)
A 		22.6
(3)
A 		8
B 27.2
(3)
M 		17.2
(-3)
A 		18
(-2.5)
A 		17.2
(-3)
A 		10
C 25.2
(3)
A 		21.1
(1.1)
A 		12
(-3)
A 		20.7
(1)
A 		13
avr 24.9
(3) 		17.7
(-2) 		16.3
(-3) 		20.2
(-0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 17.6
(-0.3)
A 		28
(3)
A 		20.6
(0.7)
P 		18.1
(-0.1)
A 		27.6
(2.9)
A 		8.8
(-3)
A 		19
B 23.8
(0.2)
A 		29.4
(1.5)
A 		10.6
(-3)
A 		14.6
(-2)
A 		35.7
(3)
A 		15.6
(-1.8)
A 		25
C 20.6
(-0.1)
A 		33.2
(3)
A 		15.5
(-1.4)
A 		9
(-3)
A 		18.4
(-0.7)
A 		9.7
(-2.8)
A 		24
avr 20.7
(-0) 		30.2
(3) 		15.6
(-1.7) 		13.9
(-2.2) 		27.2
(2) 		11.4
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16807
Sequence Type Exemplar sequence
Representative Public ID C10A4.1 NCBI
Target Description C10A4.1 /REP_DB=WormBase Gene ID /WP=CE02469 /TR=Q17894 /GB=AAC46515.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase HFL1 (D. melanogaster)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076854 NCBI Caenorhabditis elegans C10A4.1 (C10A4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027716 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7415727:7421852:1 11/11 None
SNAP00000027711 ENSEMBL cdna:SNAP chromosome:CEL140:X:7415785:7418573:1 11/11 None
C10A4.1 ENSEMBL cdna:known chromosome:CEL140:X:7415785:7418573:1 gene:C10A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7415783-7418572(+) 99.73 100.0
Public Domain and Genome References
Gene Title transposase HFL1 (D. melanogaster)
Ensembl C10A4.1
Entrez Gene 182482 Entrez gene
SwissProt Q17894 EMBL-EBI
WormBase CE02469 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255770_AT hAT dimerisation domain-containing protein / BED zinc finger domain-containing protein / transposase-related at
CANINE_2:CFAAFFX.1999.1.S1_AT similar to Zinc finger BED domain containing protein 4 cfa
CHICKEN:GGAAFFX.22623.1.S1_AT similar to Zinc finger BED domain containing protein 4 gga
HG-U95AV2:31788_AT zinc finger, BED-type containing 4 hs
HG-U133A:204799_AT zinc finger, BED-type containing 4 hs
HG-U133_PLUS_2:204799_AT zinc finger, BED-type containing 4 hs
HG-U133A_2:204799_AT zinc finger, BED-type containing 4 hs
U133_X3P:G7662217_3P_S_AT zinc finger, BED-type containing 4 hs
HG-U133A_2:214747_AT Zinc finger, BED-type containing 4 hs
HG-U133_PLUS_2:214747_AT Zinc finger, BED-type containing 4 hs
HG-U133A:214747_AT Zinc finger, BED-type containing 4 hs
HG-U95E:79031_AT Zinc finger, BED-type containing 4 hs
HG-U95E:81714_AT Zinc finger, BED-type containing 4 hs
HG-U95D:86671_AT Zinc finger, BED-type containing 4 hs
HU35KSUBC:RC_N52078_AT Zinc finger, BED-type containing 4 hs
HU35KSUBC:RC_T25848_AT Zinc finger, BED-type containing 4 hs
MOUSE430_2:1427090_AT zinc finger, BED domain containing 4 mm
MOUSE430A_2:1427090_AT zinc finger, BED domain containing 4 mm
MOE430A:1427090_AT zinc finger, BED domain containing 4 mm
MG-U74BV2:113676_AT zinc finger, BED domain containing 4 mm
MG-U74CV2:166247_AT zinc finger, BED domain containing 4 mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46983 protein dimerization activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46515 Hypothetical protein C10A4.1 [Caenorhabditis elegans] ref|NP_509255.1| C10A4.1 [Caenorhabditis elegans] 0.0
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 1.0E-101
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 1.0E-100
blast CAA90614 Hypothetical protein K09A11.1 [Caenorhabditis elegans] ref|NP_510202.2| K09A11.1 [Caenorhabditis elegans] 5.0E-93
blast AAL93203 transposase [Bactrocera dorsalis] 7.0E-36
blast AAL93203 transposase [Bactrocera dorsalis] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 1.4E-23
Pfam IPR008906 EMBL-EBI HAT dimerisation 1.4E-23
Pfam IPR008906 EMBL-EBI HAT dimerisation 1.4E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027716 1 629-648
Sequence
Target Sequence 
>C. ELEGANS:192615_AT
gtacagtgcctgccgatatttacagtttgcaactctcttggacccgcgatataaagatca
cttttgtacggatgagttcaaacacatgtttatcgaagaatttgagaagtgtaatgaaga
tgatgtgtacattacttctgataacgaagttcgccttttggactcacacagtgattcttc
ggatgaggcacccgcgaaaaacgccaaattcgattttgagaaatttatcgagaagagaat
tagtgaacaaccaaagccgattccaaattgtgataattcactgactgcaagaatggaagt
tcaacgttatttgtctacgtcggttgaacaagtcaatccgcgacagttttggacaagccg
tgtcacaacttcagtgtaccctcggttatgcaaatttgcagctcgatttatcatttgccc
atccggttcagctgaagttgaacgagtgttttcgacggcaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAGTGCCTGCCGATATTTACAG 275 461 1266 Antisense
ACTCTCTTGGACCCGCGATATAAAG 190 101 1297 Antisense
TCGCCTTTTGGACTCACACAGTGAT 120 599 1416 Antisense
GTGATTCTTCGGATGAGGCACCCGC 617 483 1436 Antisense
TGAGGCACCCGCGAAAAACGCCAAA 619 567 1449 Antisense
GTTATTTGTCTACGTCGGTTGAACA 472 447 1571 Antisense
ACAAGTCAATCCGCGACAGTTTTGG 141 103 1593 Antisense
GACAAGCCGTGTCACAACTTCAGTG 107 365 1617 Antisense
AACTTCAGTGTACCCTCGGTTATGC 444 139 1632 Antisense
CAGCTCGATTTATCATTTGCCCATC 640 201 1664 Antisense
GAACGAGTGTTTTCGACGGCAGGAG 34 347 1705 Antisense
Sequence Source Affymetrix Proprietary Database