[Home] | [Total List]

[192612_at] Zinc finger, C2H2 type (5 domains)

Description F43G9.11 /REP_DB=WormBase Gene ID /WP=CE17821 /TR=Q93721 /GB=CAB02113.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster 6grp_total > 37      4grp_total > 41      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 35.2
(-3)
A 		63.7
(0.2)
A 		88.8
(3)
A 		35.6
(-3)
A 		54
B 15.7
(-2.5)
A 		56.9
(3)
A 		56.7
(3)
A 		12.1
(-3)
A 		45
C 25.2
(-3)
A 		114.2
(3)
A 		63.1
(-0.4)
A 		90.9
(1.4)
A 		89
avr 25.4
(-3) 		78.3
(3) 		69.5
(2) 		46.2
(-0.6) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 36.2
(-0.2)
A 		57.5
(1.6)
M 		17.5
(-1.9)
A 		4.4
(-3)
A 		9
(-2.6)
A 		73.7
(3)
A 		69
B 67.9
(3)
A 		51.9
(0.4)
A 		30.7
(-3)
A 		45
(-0.7)
A 		31.5
(-2.9)
A 		61.1
(1.9)
P 		37
C 59.6
(3)
A 		42.1
(0.8)
A 		13.1
(-2.7)
A 		10.9
(-3)
A 		23.1
(-1.5)
A 		23.8
(-1.4)
A 		49
avr 54.6
(3) 		50.5
(2.3) 		20.4
(-2.9) 		20.1
(-3) 		21.2
(-2.8) 		52.9
(2.7) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 12.8
(-0.5)
A 		13.8
(-0.1)
A 		23.2
(3)
A 		5.2
(-3)
A 		18
B 5
(-1.7)
A 		14.1
(3)
A 		13.1
(2.5)
A 		2.6
(-3)
A 		12
C 8.4
(-3)
A 		32.8
(3)
A 		22
(0.3)
A 		15.3
(-1.3)
A 		24
avr 8.7
(-2.5) 		20.2
(3) 		19.4
(2.6) 		7.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.7
(-1.3)
A 		20.4
(3)
M 		3.8
(-2.2)
A 		1.1
(-3)
A 		2.7
(-2.5)
A 		17.9
(2.2)
A 		19
B 23.6
(3)
A 		17.3
(0.7)
A 		7.5
(-3)
A 		11.9
(-1.4)
A 		12.8
(-1)
A 		22.8
(2.7)
P 		16
C 22.1
(3)
A 		12.9
(0.2)
A 		3.3
(-2.7)
A 		2.2
(-3)
A 		7.5
(-1.4)
A 		8
(-1.3)
A 		20
avr 17.5
(3) 		16.9
(2.7) 		4.9
(-3) 		5.1
(-2.9) 		7.7
(-1.7) 		16.2
(2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.846
Sequence Type Exemplar sequence
Representative Public ID F43G9.11 NCBI
Target Description F43G9.11 /REP_DB=WormBase Gene ID /WP=CE17821 /TR=Q93721 /GB=CAB02113.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059937 NCBI Caenorhabditis elegans CEll death Specification family member (ces-1) (ces-1) mRNA, complete cds. 11/11 None
F43G9.11 ENSEMBL cdna:known chromosome:CEL140:I:8642074:8644169:1 gene:F43G9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043552 7/11 Cross Hyb Matching Probes None
SNAP00000043542 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8642004-8644100(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (5 domains)
Gene Symbol ces-1
Ensembl F43G9.11
Entrez Gene 185718 Entrez gene
SwissProt Q93721 EMBL-EBI
WormBase CE17821 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630860_AT scratch dm
DROSGENOME1:152002_AT scratch dm
CHICKEN:GGAAFFX.3666.1.S1_AT similar to Transcriptional repressor scratch 2 (Scratch homolog 2 zinc finger protein) gga
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3690 double-stranded DNA binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02113 Hypothetical protein F43G9.11 [Caenorhabditis elegans] ref|NP_492338.1| CEll death Specification family member (ces-1) [Caenorhabditis elegans] gb|AAF01678.1| CES-1 [Caenorhabditis elegans] 1.0E-144
blast AAF01686 CES-1 [Caenorhabditis briggsae] 1.0E-101
blast CAE67088 Hypothetical protein CBG12499 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.1E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:192612_AT
gaagatgtatcttcatctccgtctccaacatgttctaccactggatatacattggattca
cttcaaaatttggatagaagaagcttgaataaaaaaggaccatcctctcataacagatgt
gtatgtgacaaatgtgggaaaagctacgcaacaacttccaatctcagtcgacacaagcag
acgcacagagctttggatagtccacatgccaaacaatgccctcattgtgatcgagtctac
gtcagtatgcctgcactaagcatgcacattttaacacacaacgcttctcatgaatgtaat
gtttgcgggaaacgattttcgagactttggctgctccagggacatcttcgttctcacaca
ggtcttcggcctttctcttgtgctcattgtggaaaatcatttgctgatcggagcaactta
cgagcgcacatgctaactcatacaggtgacaaacgattcgaatgtgataaatgtggtcgt
cgatttgccctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATGTATCTTCATCTCCGTCTC 274 339 295 Antisense
GTCTCCAACATGTTCTACCACTGGA 132 471 315 Antisense
GCAACAACTTCCAATCTCAGTCGAC 219 319 442 Antisense
TAGTCCACATGCCAAACAATGCCCT 392 653 492 Antisense
ATGCCCTCATTGTGATCGAGTCTAC 629 41 510 Antisense
AGTCTACGTCAGTATGCCTGCACTA 460 61 528 Antisense
GCACATTTTAACACACAACGCTTCT 638 315 558 Antisense
GATTTTCGAGACTTTGGCTGCTCCA 647 429 608 Antisense
CCTTTCTCTTGTGCTCATTGTGGAA 523 269 664 Antisense
ACGAGCGCACATGCTAACTCATACA 550 93 714 Antisense
TAAATGTGGTCGTCGATTTGCCCTG 411 639 762 Antisense
Sequence Source Affymetrix Proprietary Database