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[192611_s_at] Zinc finger, C2H2 type (3 domains)

Description F34D10.5 /REP_DB=WormBase Gene ID /WP=CE24940 /TR=Q19996 /GB=CAA84317.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 33      6grp_total > 02      4grp_total > 38      6grp_cgc > 42      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 210.3
(3)
P 		138.5
(-2)
P 		124.4
(-3)
P 		164.1
(-0.2)
M 		86
B 201.2
(3)
P 		157.1
(-0.7)
P 		130
(-2.9)
P 		129.1
(-3)
P 		72
C 218.3
(3)
P 		158
(0.1)
P 		94.5
(-3)
P 		132.8
(-1.1)
P 		124
avr 209.9
(3) 		151.2
(-0.8) 		116.3
(-3) 		142
(-1.4) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 146.3
(1.5)
P 		153.7
(2)
P 		167.9
(3)
P 		117.5
(-0.5)
P 		158.4
(2.3)
P 		81.5
(-3)
A 		86
B 228.9
(3)
P 		209.4
(2.2)
P 		151.1
(-0.2)
P 		138.8
(-0.7)
P 		163.3
(0.3)
P 		84.6
(-3)
P 		144
C 190
(-0.5)
P 		300.1
(3)
P 		158.7
(-1.5)
P 		171.6
(-1.1)
P 		161.7
(-1.4)
P 		113.4
(-3)
P 		187
avr 188.4
(1.5) 		221.1
(3) 		159.2
(0.1) 		142.6
(-0.7) 		161.1
(0.2) 		93.2
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 76.6
(3)
P 		30.1
(-2.3)
P 		32.5
(-2)
P 		24
(-3)
M 		53
B 64.2
(3)
P 		38.8
(-1.2)
P 		30.1
(-2.6)
P 		27.5
(-3)
P 		37
C 72.3
(3)
P 		45.4
(-0.2)
P 		33
(-1.7)
P 		22.4
(-3)
P 		50
avr 71
(3) 		38.1
(-1.3) 		31.9
(-2.1) 		24.6
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 27
(-1.8)
P 		54.7
(3)
P 		36.6
(-0.1)
P 		29.8
(-1.3)
P 		47.8
(1.8)
P 		19.9
(-3)
A 		35
B 79.6
(3)
P 		69.7
(1.8)
P 		36.7
(-2.4)
P 		36.8
(-2.3)
P 		66.4
(1.4)
P 		31.5
(-3)
P 		48
C 70.4
(0.8)
P 		91.6
(3)
P 		40.4
(-2.4)
P 		34.5
(-3)
P 		52.3
(-1.1)
P 		38
(-2.6)
P 		57
avr 59
(1.2) 		72
(3) 		37.9
(-1.8) 		33.7
(-2.4) 		55.5
(0.7) 		29.8
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192611_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7321
Sequence Type Exemplar sequence
Representative Public ID F34D10.5 NCBI
Target Description F34D10.5 /REP_DB=WormBase Gene ID /WP=CE24940 /TR=Q19996 /GB=CAA84317.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065358 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-48) (lin-48) mRNA, complete cds. 11/11 A 
SNAP00000033688 ENSEMBL cdna:SNAP chromosome:CEL140:III:3745439:3747270:1 11/11 None
GENEFINDER00000033694 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3745439:3747270:1 11/11 None
F34D10.5 ENSEMBL cdna:known chromosome:CEL140:III:3745439:3747270:1 gene:F34D10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3745438-3747270(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Gene Symbol lin-48
Ensembl F34D10.5
Entrez Gene 175485 Entrez gene
SwissProt Q19996 EMBL-EBI
WormBase CE24940 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84317 Hypothetical protein F34D10.5 [Caenorhabditis elegans] ref|NP_497759.1| abnormal cell LINeage family member (lin-48) [Caenorhabditis elegans] gb|AAD29691.1| putative zinc finger transcription factor [Caenorhabditis elegans] 1.0E-124
blast CAE64491 Hypothetical protein CBG09216 [Caenorhabditis briggsae] 1.0E-100
blast XP_624482 PREDICTED: similar to ENSANGP00000019944 [Apis mellifera] 3.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.0E-6
Sequence
Target Sequence 
>C. ELEGANS:192611_S_AT
ccacctcaattccgtgttcaacagtatctccttcatccctcatctcctccagcaaagacg
agttccaagattcattaacctgtcacatttgcggcaaaaagttcggtttacaacgtcttc
tgaaccgtcacataaagtgtcatagtgacctgaaacggtatctatgcacattttgtggaa
agggtttcaacgatacattcgacttaaaaaggcataccagaacacatacaggcgtccgtc
cctacaaatgtgagcaatgcgagaagtcgttcactcaacgatgctccttggaatcccatt
tacggaaagttcacggtgtcactcatcaatatgcctacaaagagcgtcgtagtaaggtat
tcgtctgtgaagattgtggttatacggacgaaaagttcgaagtctatctatctcacatca
aggtagtacaccccttctcggccgcctaccttcggtttacacagcttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCTCAATTCCGTGTTCAACAGT 708 273 335 Antisense
CTCATCTCCTCCAGCAAAGACGAGT 579 227 373 Antisense
CATTAACCTGTCACATTTGCGGCAA 98 215 407 Antisense
TACAACGTCTTCTGAACCGTCACAT 216 643 443 Antisense
CGTCCGTCCCTACAAATGTGAGCAA 179 245 567 Antisense
GAAGTCGTTCACTCAACGATGCTCC 127 337 597 Antisense
AACGATGCTCCTTGGAATCCCATTT 105 145 611 Antisense
TCACGGTGTCACTCATCAATATGCC 319 627 645 Antisense
GTTCGAAGTCTATCTATCTCACATC 639 441 729 Antisense
CATCAAGGTAGTACACCCCTTCTCG 259 201 750 Antisense
TACCTTCGGTTTACACAGCTTCAGA 206 651 781 Antisense
Sequence Source Affymetrix Proprietary Database