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[192608_at] Zinc finger, C2H2 type (2 domains)

Description Y38H8A.5 /REP_DB=WormBase Gene ID /WP=CE25730 /TR=O62425 /GB=CAA16344.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_total > 11      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 120.9
(-3)
P 		219.8
(3)
A 		135.9
(-2.1)
A 		121.5
(-3)
A 		99
B 140.3
(-1.6)
A 		157.1
(-0.9)
A 		110.4
(-3)
A 		242.9
(3)
P 		133
C 101.8
(-2.3)
P 		91.6
(-3)
A 		103.8
(-2.2)
A 		185.7
(3)
P 		94
avr 121
(-2.6) 		156.2
(0.6) 		116.7
(-3) 		183.4
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 75.3
(-0.1)
A 		108
(3)
A 		100.2
(2.2)
A 		106.4
(2.8)
A 		108.4
(3)
A 		44.7
(-3)
A 		64
B 119.8
(3)
P 		100.7
(1.8)
A 		82.5
(0.7)
A 		22.4
(-3)
A 		94.5
(1.4)
A 		57
(-0.9)
A 		97
C 100.2
(1.3)
P 		133.8
(3)
A 		111.5
(1.9)
A 		12.1
(-3)
A 		71.1
(-0.1)
A 		52.1
(-1)
A 		122
avr 98.4
(1.6) 		114.2
(3) 		98.1
(1.6) 		47
(-3) 		91.3
(1) 		51.3
(-2.6) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 44
(2.3)
P 		47.7
(3)
A 		35.5
(0.6)
A 		17.8
(-3)
A 		30
B 44.8
(1.4)
A 		38.8
(0)
A 		25.6
(-3)
A 		51.8
(3)
P 		26
C 33.7
(1.5)
P 		26.3
(-3)
A 		36.2
(3)
A 		31.3
(0)
P 		10
avr 40.8
(3) 		37.6
(0.7) 		32.4
(-3) 		33.6
(-2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 13.9
(-2.3)
A 		38.4
(3)
A 		21.8
(-0.6)
A 		27
(0.5)
A 		32.7
(1.8)
A 		10.9
(-3)
A 		28
B 41.7
(3)
P 		33.5
(1.6)
A 		20
(-0.6)
A 		5.9
(-3)
A 		38.4
(2.4)
A 		21.2
(-0.4)
A 		36
C 37.1
(2.4)
P 		40.8
(3)
A 		28.4
(1.1)
A 		2.4
(-3)
A 		23
(0.2)
A 		17.4
(-0.7)
A 		38
avr 30.9
(1.4) 		37.6
(3) 		23.4
(-0.3) 		11.8
(-3) 		31.4
(1.6) 		16.5
(-1.9) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10301
Sequence Type Exemplar sequence
Representative Public ID Y38H8A.5 NCBI
Target Description Y38H8A.5 /REP_DB=WormBase Gene ID /WP=CE25730 /TR=O62425 /GB=CAA16344.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070193 NCBI Caenorhabditis elegans Y38H8A.5 (Y38H8A.5) mRNA, complete cds. 11/11 None
Y38H8A.5 ENSEMBL cdna:known chromosome:CEL140:IV:13465339:13469357:1 gene:Y38H8A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13466573-13469363(+) 90.94 90.94
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl Y38H8A.5
Entrez Gene 3564888 Entrez gene
SwissProt O62425 EMBL-EBI
WormBase CE25730 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591919_AT similar to zinc finger protein 312 cfa
CANINE_2:CFAAFFX.11546.1.S1_AT similar to zinc finger protein 312 cfa
HG-U133_PLUS_2:221086_S_AT zinc finger protein 312 hs
HG-U133A_2:221086_S_AT zinc finger protein 312 hs
HG-U133A:221086_S_AT zinc finger protein 312 hs
HG-U133_PLUS_2:233972_S_AT zinc finger protein 312 hs
HG-U133B:233972_S_AT zinc finger protein 312 hs
HU35KSUBB:RC_H28929_AT zinc finger protein 312 hs
U133_X3P:G8922251_3P_A_AT zinc finger protein 312 hs
U133_X3P:HS.241523.2.S1_3P_A_AT zinc finger protein 312 hs
HG-U133_PLUS_2:233897_AT zinc finger protein 312 hs
HG-U133B:233897_AT zinc finger protein 312 hs
MU11KSUBB:MSA.17097.0_S_AT zinc finger protein 312 mm
MG-U74AV2:92229_AT zinc finger protein 312 mm
MOE430A:1418790_AT zinc finger protein 312 mm
MOUSE430A_2:1418790_AT zinc finger protein 312 mm
MOUSE430_2:1418790_AT zinc finger protein 312 mm
MU19KSUBA:TC17980_AT Zinc finger protein 312 (Zfp312), mRNA mm
MU19KSUBA:TC17980_G_AT Zinc finger protein 312 (Zfp312), mRNA mm
RAE230B:1385130_AT zinc finger protein 312 (predicted) rn
RAT230_2:1385130_AT zinc finger protein 312 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16344 Hypothetical protein Y38H8A.5 [Caenorhabditis elegans] ref|NP_502594.1| Y38H8A.5 [Caenorhabditis elegans] 1.0E-120
blast CAE58597 Hypothetical protein CBG01764 [Caenorhabditis briggsae] 1.0E-104
blast AAH85677 Fezl protein [Danio rerio] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:192608_AT
gtacatactggagaacggccgttcgtttgtaaggtatgcggaaaagcatttcgtcaagca
tccactctctgccgtcataaaatcattcacactgacagtaaaccacataagtgcaaaaca
tgtggcaaatgtttcaatagatcgtcaacactcaacactcacgtcaggattcatcaagga
ttcaagccattcgtgtgtgaaatatgcgggaaaggattccaccagaacggaaattacaag
aaccatcgactgactcacgaggatacgaaaaagttttcttgctcaatctgcagtagggca
ttccaccaatcgtataaccttgcattccacatgttcacacacgaagaacacaaaccgttc
acttgccacgtgtgttcaaaaggattctgccgaaactttgacctaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATACTGGAGAACGGCCGTTCG 560 457 157 Antisense
AAAAGCATTTCGTCAAGCATCCACT 221 131 198 Antisense
CCACTCTCTGCCGTCATAAAATCAT 492 275 218 Antisense
ACACTCAACACTCACGTCAGGATTC 105 109 304 Antisense
CAAGGATTCAAGCCATTCGTGTGTG 86 185 331 Antisense
GAACCATCGACTGACTCACGAGGAT 647 345 396 Antisense
TCTGCAGTAGGGCATTCCACCAATC 557 605 443 Antisense
AATCGTATAACCTTGCATTCCACAT 420 169 464 Antisense
GCATTCCACATGTTCACACACGAAG 644 307 478 Antisense
AGAACACAAACCGTTCACTTGCCAC 52 73 501 Antisense
GATTCTGCCGAAACTTTGACCTAAA 646 431 539 Antisense
Sequence Source Affymetrix Proprietary Database