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[192607_at] Human mRNA (KIAA0033) like protein

Description T07F10.4 /REP_DB=WormBase Gene ID /WP=CE06397 /TR=Q22316 /GB=CAB01241.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0033) like protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 52      6grp_total > 20      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1033
1 2 3 4 range
A 562.8
(-1.3)
P 		1031.4
(2.1)
P 		1159.8
(3)
P 		322.9
(-3)
P 		837
B 619.5
(-1.2)
P 		1232
(3)
P 		1209.4
(2.8)
P 		356.9
(-3)
P 		875
C 621
(-1.6)
P 		1175.9
(1.9)
P 		1356.3
(3)
P 		406.7
(-3)
P 		950
avr 601.1
(-1.4) 		1146.4
(2.3) 		1241.8
(3) 		362.2
(-3) 		880

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 707
1 2 3 4 5 6 range
A 330.2
(-2.3)
P 		827.3
(3)
P 		677.2
(1.4)
P 		626.2
(0.9)
P 		739.8
(2.1)
P 		261.7
(-3)
P 		566
B 351.1
(-2.4)
P 		944.5
(3)
P 		777.1
(1.5)
P 		822.8
(1.9)
P 		652.3
(0.3)
P 		287.6
(-3)
P 		657
C 440
(-1.1)
P 		884.9
(3)
P 		735.2
(1.6)
P 		882.4
(3)
P 		617.8
(0.5)
P 		237.2
(-3)
P 		648
avr 373.8
(-1.9) 		885.6
(3) 		729.8
(1.5) 		777.1
(2) 		670
(0.9) 		262.2
(-3) 		623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 204.9
(0.7)
P 		223.9
(1.1)
P 		303.2
(3)
P 		47.3
(-3)
P 		256
B 197.5
(0.2)
P 		304.3
(3)
P 		280.2
(2.4)
P 		76.1
(-3)
P 		228
C 205.6
(-1)
P 		338.1
(1)
P 		472.7
(3)
P 		68.6
(-3)
P 		404
avr 202.7
(-0.1) 		288.8
(1.7) 		352
(3) 		64
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 60.9
(-3)
P 		294.2
(3)
P 		147.5
(-0.8)
P 		158.8
(-0.5)
P 		223.3
(1.2)
P 		63.7
(-2.9)
P 		233
B 122.2
(-2.6)
P 		314.4
(3)
P 		188.7
(-0.6)
P 		217.9
(0.2)
P 		265
(1.6)
P 		107.2
(-3)
P 		207
C 163.1
(-0.4)
P 		270
(3)
P 		187.1
(0.4)
P 		177.4
(0.1)
P 		199.9
(0.8)
P 		79.4
(-3)
P 		191
avr 115.4
(-2.1) 		292.9
(3) 		174.4
(-0.4) 		184.7
(-0.1) 		229.4
(1.2) 		83.4
(-3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12545
Sequence Type Exemplar sequence
Representative Public ID T07F10.4 NCBI
Target Description T07F10.4 /REP_DB=WormBase Gene ID /WP=CE06397 /TR=Q22316 /GB=CAB01241.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0033) like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073822(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073822 NCBI Caenorhabditis elegans T07F10.4 (T07F10.4) mRNA, complete cds. 9/11 None
GENEFINDER00000014615 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12881297:12883227:1 9/11 None
T07F10.4.1 ENSEMBL cdna:known chromosome:CEL140:V:12881104:12884686:1 gene:T07F10.4 9/11 None
T07F10.4.2 ENSEMBL cdna:known chromosome:CEL140:V:12881106:12884686:1 gene:T07F10.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12881296-12884074(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human mRNA (KIAA0033) like protein
Ensembl T07F10.4
Entrez Gene 179766 Entrez gene
SwissProt Q22316 EMBL-EBI
WormBase CE36194 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260174_AT expressed protein at
CANINE_2:CFAAFFX.20471.1.S1_AT similar to transmembrane protein 41A cfa
CHICKEN:GGA.5723.1.S1_A_AT similar to hypothetical protein MGC15397 gga
HU35KSUBA:HUM_ALU_AT transmembrane protein 41A hs
HU35KSUBB:HUM_ALU_AT transmembrane protein 41A hs
HU35KSUBC:HUM_ALU_AT transmembrane protein 41A hs
HU35KSUBD:HUM_ALU_AT transmembrane protein 41A hs
HUGENEFL:HUM_ALU_AT transmembrane protein 41A hs
HC-G110:HUM_ALU_AT transmembrane protein 41A hs
U133_X3P:HS.144609.0.A1_3P_AT transmembrane protein 41A hs
HG-U133_PLUS_2:235037_AT transmembrane protein 41A hs
HG-U133B:235037_AT transmembrane protein 41A hs
HG-U95E:78014_AT transmembrane protein 41A hs
HG-U95E:82636_AT transmembrane protein 41A hs
HU35KSUBB:RC_R40702_AT Transmembrane protein 41A hs
HU35KSUBB:RC_H29302_AT Transmembrane protein 41A hs
HU35KSUBC:RC_AA075517_AT Transmembrane protein 41A hs
U133_X3P:HS.21291.1.A1_3P_AT Transmembrane protein 41A hs
U133_X3P:HS.124758.0.A1_3P_AT Transmembrane protein 41A hs
HG-U133_PLUS_2:225991_AT Transmembrane protein 41A hs
HG-U133B:225991_AT Transmembrane protein 41A hs
HG-U133_PLUS_2:229771_AT Transmembrane protein 41A hs
HG-U133B:229771_AT Transmembrane protein 41A hs
HG-U95B:47459_AT Transmembrane protein 41A hs
HG-U95B:49450_AT Transmembrane protein 41A hs
MOE430A:1424191_A_AT transmembrane protein 41a mm
MOUSE430A_2:1424191_A_AT transmembrane protein 41a mm
MOUSE430_2:1424191_A_AT transmembrane protein 41a mm
MG-U74BV2:114002_AT transmembrane protein 41a mm
MG-U74CV2:170328_AT transmembrane protein 41a mm
MU19KSUBB:TC33277_AT Transmembrane protein 41a (Tmem41a), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAB01241 Hypothetical protein T07F10.4 [Caenorhabditis elegans] ref|NP_506223.2| T07F10.4 [Caenorhabditis elegans] 1.0E-139
blast CAE64725 Hypothetical protein CBG09512 [Caenorhabditis briggsae] 1.0E-134
blast CAB01241 Hypothetical protein T07F10.4 [Caenorhabditis elegans] ref|NP_506223.2| T07F10.4 [Caenorhabditis elegans] 1.0E-124
blast CAE64725 Hypothetical protein CBG09512 [Caenorhabditis briggsae] 1.0E-124
blast NP_079969 transmembrane protein 41a [Mus musculus] dbj|BAB25189.1| unnamed protein product [Mus musculus] gb|AAH19770.1| Transmembrane protein 41a [Mus musculus] 1.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506223.2 6 5-22,63-85,98-120,151-173,178-200,210-232
T07F10.4.1 6 5-22,63-85,98-120,151-173,178-200,210-232
T07F10.4.2 6 5-22,63-85,98-120,151-173,178-200,210-232
GENEFINDER00000014615 6 5-22,63-85,98-120,175-197,204-226,236-258
Sequence
Target Sequence 
>C. ELEGANS:192607_AT
catccccggatcgttcttattgaatgtgattgccggagttgtgtacgatttgtggtcggg
attcatcctttgctgttgcctaacgaccctcggaagtacgctctgctacatgttctcaga
actatttggaagagaatacgtgttttactactttggacaaaaattaacatatcttcaaca
aaaaatcgacgacaattcgaatcggttattaccgtttttattatttgctcgaatgtttcc
tatttcaccatcatggcttcttaacatcgtcgctcctttcctcaacattccacttccaat
attcgtcgtctcagcactttttggtattcattttcttcatttttcttctttttttctgag
tcttaattttgcctcattttacaaatattcacttggtttaggtctggcgccgtacaattt
catttgtgttcaagcagggtacattttaagagatttgcggtcttgggacgatgtgttcag
cacgacaacaatgctgaaacttttttcatttgcattgataccactcgcctacgcaatcta
cattcgccctcgtgccaataaacaccagttggtatcaagctccgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCCCGGATCGTTCTTATTGAAT 610 211 246 Antisense
TACGCTCTGCTACATGTTCTCAGAA 88 649 342 Antisense
GTTTCCTATTTCACCATCATGGCTT 397 451 480 Antisense
ATCATGGCTTCTTAACATCGTCGCT 403 29 495 Antisense
AACATTCCACTTCCAATATTCGTCG 160 139 529 Antisense
GTCGTCTCAGCACTTTTTGGTATTC 411 473 550 Antisense
TTTAGGTCTGGCGCCGTACAATTTC 18 613 642 Antisense
GGTCTTGGGACGATGTGTTCAGCAC 444 503 704 Antisense
TCATTTGCATTGATACCACTCGCCT 702 619 751 Antisense
GCCCTCGTGCCAATAAACACCAGTT 396 285 791 Antisense
CACCAGTTGGTATCAAGCTCCGACG 400 193 808 Antisense
Sequence Source Affymetrix Proprietary Database