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[192602_s_at]

Description C07G2.3 /REP_DB=WormBase Gene ID /WP=CE02985 /GEN=cct-5 /TR=SW:P47209 /GB=CAA84660.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=TCP-1 like chaperonin
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 02      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 15      6grp_total > 34      4grp_total > 09      6grp_highest_sub > De      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8972
1 2 3 4 range
A 6746.4
(-3)
P 		6816.3
(-2.9)
P 		7154
(-2.6)
P 		13010.7
(3)
P 		6264
B 5832
(-3)
P 		6861.6
(-2.3)
P 		7225.6
(-2.1)
P 		14803.6
(3)
P 		8972
C 6886.6
(-3)
P 		7226.7
(-2.7)
P 		7645.2
(-2.3)
P 		13116.4
(3)
P 		6230
avr 6488.3
(-3) 		6968.2
(-2.6) 		7341.6
(-2.3) 		13643.6
(3) 		7155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2878
1 2 3 4 5 6 range
A 4315.6
(-1.9)
P 		5815.9
(3)
P 		5471.1
(1.9)
P 		4765.1
(-0.5)
P 		3997
(-3)
P 		5671.3
(2.5)
P 		1819
B 6263.6
(2.9)
P 		5851.8
(2)
P 		6297.4
(3)
P 		5322.5
(0.8)
P 		3634.6
(-3)
P 		4329.7
(-1.4)
P 		2663
C 6236.3
(2.3)
P 		6512.7
(3)
P 		5171.9
(-0.4)
P 		4145.1
(-3)
P 		4576.9
(-1.9)
P 		4141.4
(-3)
P 		2371
avr 5605.2
(1.6) 		6060.1
(3) 		5646.8
(1.8) 		4744.2
(-1) 		4069.5
(-3) 		4714.1
(-1.1) 		1991
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1675
1 2 3 4 range
A 2456.4
(3)
P 		1479.6
(-3)
P 		1870.2
(-0.6)
P 		1904.5
(-0.4)
P 		977
B 1859.8
(-2.2)
P 		1694.7
(-2.9)
P 		1674.3
(-3)
P 		3154.7
(3)
P 		1480
C 2279.7
(-0.9)
P 		2077.7
(-3)
P 		2664.6
(3)
P 		2211.6
(-1.6)
P 		587
avr 2198.6
(1) 		1750.7
(-3) 		2069.7
(-0.2) 		2423.6
(3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1516
1 2 3 4 5 6 range
A 795.5
(-3)
P 		2068.4
(3)
P 		1191.5
(-1.1)
P 		1208.6
(-1.1)
P 		1206.1
(-1.1)
P 		1380.8
(-0.2)
P 		1273
B 2179.4
(3)
P 		1947.8
(1.2)
P 		1529.2
(-2.1)
P 		1409.7
(-3)
P 		1476.7
(-2.5)
P 		1614.5
(-1.4)
P 		770
C 2311.5
(3)
P 		1987.2
(1.7)
P 		1316.3
(-1)
P 		833.6
(-3)
P 		1481
(-0.4)
P 		1386.4
(-0.8)
P 		1478
avr 1762.1
(1.3) 		2001.1
(3) 		1345.7
(-1.6) 		1150.6
(-3) 		1387.9
(-1.3) 		1460.6
(-0.8) 		851
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192602_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7732
Sequence Type Exemplar sequence
Representative Public ID C07G2.3 NCBI
Target Description C07G2.3 /REP_DB=WormBase Gene ID /WP=CE02985 /GEN=cct-5 /TR=SW:P47209 /GB=CAA84660.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=TCP-1 like chaperonin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065514(11), NM_171104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065514 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-5) (cct-5) mRNA, complete cds. 11/11 A 
NM_171104 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-5) (cct-5) mRNA, complete cds. 11/11 None
GENEFINDER00000003826 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4492272:4501475:-1 11/11 None
SNAP00000003824 ENSEMBL cdna:SNAP chromosome:CEL140:III:4499426:4501515:-1 11/11 None
C07G2.3b.5 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4508079:-1 gene:C07G2.3 11/11 A 
C07G2.3b.2 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4508079:-1 gene:C07G2.3 11/11 A 
C07G2.3b.1 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4501475:-1 gene:C07G2.3 11/11 A 
C07G2.3b.6 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4501477:-1 gene:C07G2.3 11/11 A 
C07G2.3b.4 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4507836:-1 gene:C07G2.3 11/11 A 
C07G2.3b.3 ENSEMBL cdna:known chromosome:CEL140:III:4499239:4508079:-1 gene:C07G2.3 11/11 A 
C07G2.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:4499426:4508079:-1 gene:C07G2.3 11/11 None
C07G2.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:4499426:4508216:-1 gene:C07G2.3 11/11 None
C07G2.3a.4 ENSEMBL cdna:known chromosome:CEL140:III:4499426:4508085:-1 gene:C07G2.3 11/11 None
C07G2.3a.3 ENSEMBL cdna:known chromosome:CEL140:III:4499426:4508216:-1 gene:C07G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4499425-4508049(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD01079 Hypothetical protein C07G2.3b [Caenorhabditis elegans] ref|NP_497915.3| Chaperonin Containing TCP-1 family member (cct-5) [Caenorhabditis elegans] 0.0
blast CAA84660 Hypothetical protein C07G2.3a [Caenorhabditis elegans] emb|CAA83681.1| Hypothetical protein C07G2.3a [Caenorhabditis elegans] ref|NP_741117.1| Chaperonin Containing TCP-1 family member (cct-5) [Caenorhabditis elegans] sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) gb|AAA92843.1| CCT-5 0.0
blast CAE71194 Hypothetical protein CBG18052 [Caenorhabditis briggsae] 0.0
blast AAQ97754 chaperonin containing TCP1, subunit 5 (epsilon) [Danio rerio] gb|AAT68125.1| TCP-1 epsilon [Danio rerio] gb|AAH68037.1| Chaperonin containing TCP1, subunit 5 (epsilon) [Danio rerio] ref|NP_997778.1| chaperonin containing TCP1, subunit 5 (epsilon) [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 4.0E-104
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192602_S_AT
caaacgctcgaattgttccacgattctccgagctttcgaaagaaaagctgggaactgctg
gacttgttcgtgaaataacttttggagccgccaaagatcgtatgctttcgatcgaacaat
gcccaaacaacaaggctgttacaatcttcgttcgcggtggaaataagatgattattgatg
aggctaaacgagctcttcatgatgctctctgtgtcattcgcaatcttgtccgtgattctc
ggatcgtttatggtggaggatctgctgaacttgctgccgctattcaagttgcgaaggagg
ctgatcgcattgatggtatcgagcaatacgctttccgtgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGCTCGAATTGTTCCACGATT 681 189 1019 Antisense
CCACGATTCTCCGAGCTTTCGAAAG 76 275 1036 Antisense
GCTGGGAACTGCTGGACTTGTTCGT 77 293 1065 Antisense
GAGCCGCCAAAGATCGTATGCTTTC 116 387 1103 Antisense
GCTTTCGATCGAACAATGCCCAAAC 214 305 1122 Antisense
CAAGGCTGTTACAATCTTCGTTCGC 513 183 1149 Antisense
AACGAGCTCTTCATGATGCTCTCTG 4 145 1205 Antisense
ATGCTCTCTGTGTCATTCGCAATCT 348 43 1220 Antisense
ATTCGCAATCTTGTCCGTGATTCTC 472 9 1234 Antisense
CTTGCTGCCGCTATTCAAGTTGCGA 300 219 1288 Antisense
ATCGAGCAATACGCTTTCCGTGCAT 709 35 1336 Antisense
Sequence Source Affymetrix Proprietary Database