[Home] | [Total List]

[192598_s_at] polyadenylate-binding protein like

Description T07F10.3 /REP_DB=WormBase Gene ID /WP=CE06396 /TR=Q22318 /GB=CAB01243.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=polyadenylate-binding protein like
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_highest_nonorm > 83      6grp_total > 86      4grp_total > 45      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 382.4
(0.9)
P 		423.1
(3)
P 		304.5
(-3)
P 		342.6
(-1.1)
P 		119
B 441.2
(3)
P 		333.2
(-1.9)
P 		308.2
(-3)
P 		338.4
(-1.6)
P 		133
C 404.3
(3)
P 		378.7
(0.8)
P 		380.6
(0.9)
P 		335.9
(-3)
P 		68
avr 409.3
(3) 		378.3
(0.6) 		331.1
(-3) 		339
(-2.4) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 445.1
(0)
P 		402.6
(-2.4)
P 		392.2
(-3)
P 		450.5
(0.3)
P 		497.7
(3)
P 		467.3
(1.3)
P 		106
B 460.6
(2.4)
P 		320.6
(-3)
P 		437.8
(1.5)
P 		465.2
(2.6)
P 		453.1
(2.1)
P 		475.9
(3)
P 		155
C 336.2
(-3)
P 		347.5
(-2.7)
P 		428.6
(-0.9)
P 		443.1
(-0.6)
P 		408.7
(-1.3)
P 		598.8
(3)
P 		263
avr 414
(-0.8) 		356.9
(-3) 		419.5
(-0.6) 		452.9
(0.7) 		453.2
(0.7) 		514
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 139.2
(3)
P 		91.8
(-0.2)
P 		79.6
(-1)
P 		50.2
(-3)
P 		89
B 140.7
(3)
P 		82.3
(-2.1)
P 		71.4
(-3)
P 		72.1
(-2.9)
P 		69
C 133.8
(3)
P 		108.9
(1.1)
P 		132.7
(2.9)
P 		56.6
(-3)
P 		77
avr 137.9
(3) 		94.3
(-0.3) 		94.6
(-0.3) 		59.6
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 82
(-3)
P 		143.2
(2.4)
P 		85.4
(-2.7)
P 		114.3
(-0.2)
P 		150.2
(3)
P 		113.8
(-0.2)
P 		68
B 160.3
(1.2)
P 		106.7
(-3)
P 		106.3
(-3)
P 		123.2
(-1.7)
P 		184.1
(3)
P 		177.4
(2.5)
P 		78
C 124.6
(-1.1)
P 		106
(-2.1)
P 		109.1
(-1.9)
P 		89.1
(-3)
P 		132.3
(-0.7)
P 		200.5
(3)
P 		111
avr 122.3
(-0.9) 		118.6
(-1.3) 		100.3
(-3) 		108.9
(-2.2) 		155.5
(2.2) 		163.9
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192598_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14700
Sequence Type Exemplar sequence
Representative Public ID T07F10.3 NCBI
Target Description T07F10.3 /REP_DB=WormBase Gene ID /WP=CE06396 /TR=Q22318 /GB=CAB01243.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=polyadenylate-binding protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073821 NCBI Caenorhabditis elegans T07F10.3 (T07F10.3) mRNA, complete cds. 11/11 None
SNAP00000014614 ENSEMBL cdna:SNAP chromosome:CEL140:V:12870885:12872622:-1 11/11 None
GENEFINDER00000014617 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12870885:12872744:-1 11/11 None
T07F10.3 ENSEMBL cdna:known chromosome:CEL140:V:12870616:12872744:-1 gene:T07F10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12870884-12872744(-) 100.0 100.0
Public Domain and Genome References
Gene Title polyadenylate-binding protein like
Ensembl T07F10.3
Entrez Gene 179765 Entrez gene
SwissProt Q22318 EMBL-EBI
WormBase CE06396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01243 Hypothetical protein T07F10.3 [Caenorhabditis elegans] ref|NP_506222.1| T07F10.3 [Caenorhabditis elegans] 0.0
blast CAE64726 Hypothetical protein CBG09513 [Caenorhabditis briggsae] 1.0E-167
blast AAF51009 CG15440-PA [Drosophila melanogaster] ref|NP_608837.2| CG15440-PA [Drosophila melanogaster] gb|AAL90383.1| RE72132p [Drosophila melanogaster] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.2E-11
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.2E-11
Sequence
Target Sequence 
>C. ELEGANS:192598_S_AT
atatcaatcgtgtcgcggtgccaaaatgttccgatttgtcgatggatcatccaaaggatc
tggttttgtaagatttggaaatcaaactgatcagcagatggcactagtcgaaatgcatcg
aacaaaagtcggaggttgtagaattatattgaaattggcaggatctcgtggcgaacgtct
cgatcgaggggaatcgaggcaattcaaatcgcagcgaaacgatagaagaagagacgaaaa
atctggtcagtatcgaaacggcacagcagttccccagcaaacgcaggtttacgatgcata
tggaaatccagtagttgttcctgtggataaaaatatttatggaactgatcatccatgggg
accatttcccgacgatccagatttggattcaattattgggctcgatcttctcaccaccaa
atatcgtcctcaaatcgctaacaaacgtctcatgattgacacggatcagtttatgcttga
tctcgaatcaagccgatggagctcaattgctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAATCGTGTCGCGGTGCCAAA 405 19 609 Antisense
TGATCAGCAGATGGCACTAGTCGAA 623 563 696 Antisense
AAATTGGCAGGATCTCGTGGCGAAC 174 115 760 Antisense
GTGGCGAACGTCTCGATCGAGGGGA 653 489 776 Antisense
GGTCAGTATCGAAACGGCACAGCAG 358 503 853 Antisense
TTCCCCAGCAAACGCAGGTTTACGA 222 693 878 Antisense
GATCATCCATGGGGACCATTTCCCG 33 375 955 Antisense
CCATTTCCCGACGATCCAGATTTGG 429 269 970 Antisense
TTCAATTATTGGGCTCGATCTTCTC 325 685 996 Antisense
AATATCGTCCTCAAATCGCTAACAA 676 173 1028 Antisense
AGCCGATGGAGCTCAATTGCTTTCA 616 83 1099 Antisense
Sequence Source Affymetrix Proprietary Database