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[192596_s_at]

Description T03F7.7 /REP_DB=WormBase Gene ID /WP=CE20032 /TR=Q9XVU9 /GB=CAA98522.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Candida SEC14 cytosolic factor like
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 62      6grp_total > 83      4grp_total > 33      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 340.5
(-3)
P 		536.4
(2.1)
P 		517.9
(1.6)
P 		572.3
(3)
P 		232
B 360.5
(-3)
P 		517.5
(0)
P 		508.5
(-0.1)
P 		669.6
(3)
P 		309
C 356.1
(-3)
P 		596.6
(1.3)
P 		617.1
(1.7)
P 		692.7
(3)
P 		337
avr 352.4
(-3) 		550.2
(1.1) 		547.8
(1) 		644.9
(3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 540
1 2 3 4 5 6 range
A 275.2
(-3)
P 		523.3
(0.7)
P 		385.8
(-1.3)
P 		673.1
(3)
P 		674.6
(3)
P 		362.5
(-1.7)
P 		399
B 275
(-3)
P 		336.1
(-2.3)
P 		400.7
(-1.5)
P 		647.3
(1.5)
P 		776
(3)
P 		379.2
(-1.8)
P 		501
C 341.2
(-3)
P 		401.6
(-2.2)
P 		425.7
(-1.9)
P 		602.4
(0.3)
P 		814.9
(3)
P 		520.8
(-0.7)
P 		474
avr 297.1
(-3) 		420.3
(-1.4) 		404.1
(-1.6) 		640.9
(1.5) 		755.2
(3) 		420.8
(-1.4) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 124
(1.7)
P 		116.4
(0.8)
P 		135.4
(3)
P 		83.8
(-3)
P 		52
B 114.9
(-3)
P 		127.8
(-0.2)
P 		117.8
(-2.4)
P 		142.7
(3)
P 		28
C 117.9
(-2.9)
P 		171.5
(0.3)
P 		215.1
(3)
P 		116.8
(-3)
P 		98
avr 118.9
(-2.4) 		138.6
(0.5) 		156.1
(3) 		114.4
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 50.7
(-3)
P 		186.1
(2.3)
P 		84
(-1.7)
P 		170.7
(1.7)
P 		203.6
(3)
P 		88.3
(-1.5)
P 		153
B 95.7
(-3)
P 		111.9
(-2.6)
P 		97.3
(-3)
P 		171.5
(-0.9)
P 		315.3
(3)
P 		141.4
(-1.8)
P 		220
C 126.5
(-2.3)
P 		122.6
(-2.5)
P 		108.4
(-3)
P 		121.2
(-2.5)
P 		263.7
(3)
P 		174.3
(-0.5)
P 		155
avr 91
(-3) 		140.2
(-1.3) 		96.6
(-2.8) 		154.5
(-0.8) 		260.9
(3) 		134.7
(-1.5) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192596_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13604
Sequence Type Exemplar sequence
Representative Public ID T03F7.7 NCBI
Target Description T03F7.7 /REP_DB=WormBase Gene ID /WP=CE20032 /TR=Q9XVU9 /GB=CAA98522.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Candida SEC14 cytosolic factor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073473(11), NM_182373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073473 NCBI Caenorhabditis elegans T03F7.7a (T03F7.7) mRNA, complete cds. 11/11 None
NM_182373 NCBI Caenorhabditis elegans T03F7.7b (T03F7.7) mRNA, complete cds. 11/11 None
SNAP00000015852 ENSEMBL cdna:SNAP chromosome:CEL140:V:11314110:11315946:1 11/11 None
GENEFINDER00000015857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11314110:11315946:1 11/11 None
T03F7.7a ENSEMBL cdna:known chromosome:CEL140:V:11314110:11316032:1 gene:T03F7.7 11/11 None
T03F7.7b ENSEMBL cdna:known chromosome:CEL140:V:11314110:11315968:1 gene:T03F7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11314109-11315875(+) 100.0 100.0
Public Domain and Genome References
Ensembl T03F7.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98522 Hypothetical protein T03F7.7a [Caenorhabditis elegans] ref|NP_505874.1| T03F7.7a [Caenorhabditis elegans] 0.0
blast CAD56597 Hypothetical protein T03F7.7b [Caenorhabditis elegans] ref|NP_872173.1| T03F7.7b [Caenorhabditis elegans] 0.0
blast CAE75219 Hypothetical protein CBG23168 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.7E-14
Sequence
Target Sequence 
>C. ELEGANS:192596_S_AT
atgaatccgttgtcaggacctgcacagttggcacggctcgtggtgcaagtttgggcagaa
tatttcagcgaacacttgtgcaagcttcttcttatcaatccacctggaattatatccgtc
atgtggcaagtcactaaacgactcgtggaccctaatacagtagaaaagttagctttcttg
agcaacgtggaagatttgaaaaaatatttggagccggaggcaattccagtcgaatatgga
ggaacatatcgtgatgatactggatatgcagatccaccagaaggagcatgtaaacaacca
aagagaattaccaaagaagattataaaccacaagagtatatttgggttaaaaacgggatt
ctcaaggcaccgaaaggaaagagttactcgataaaagcattccagacatcagagtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATCCGTTGTCAGGACCTGCAC 654 43 526 Antisense
TGTCAGGACCTGCACAGTTGGCACG 710 545 536 Antisense
AGTTGGCACGGCTCGTGGTGCAAGT 421 63 551 Antisense
AATCCACCTGGAATTATATCCGTCA 579 165 622 Antisense
ATATCCGTCATGTGGCAAGTCACTA 678 19 637 Antisense
AAACGACTCGTGGACCCTAATACAG 355 125 661 Antisense
AAGTTAGCTTTCTTGAGCAACGTGG 665 155 691 Antisense
GAGCCGGAGGCAATTCCAGTCGAAT 414 383 736 Antisense
GATATGCAGATCCACCAGAAGGAGC 655 423 788 Antisense
ACGGGATTCTCAAGGCACCGAAAGG 598 1 878 Antisense
AAAGCATTCCAGACATCAGAGTATA 197 123 919 Antisense
Sequence Source Affymetrix Proprietary Database