[Home] | [Total List]

[192595_at] testis-specific protein TPX-1 like

Description F35E12.1 /REP_DB=WormBase Gene ID /WP=CE09916 /TR=O02354 /GB=CAB04269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 91      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.6
(-3)
A 		4.2
(-2.7)
A 		5.8
(-1.9)
A 		15.4
(3)
A 		12
B 19.4
(3)
A 		7.3
(-1.2)
A 		3.5
(-2.6)
A 		2.3
(-3)
A 		17
C 17.3
(0.1)
A 		6.4
(-3)
A 		7.8
(-2.6)
A 		27.3
(3)
A 		21
avr 13.4
(2) 		6
(-2.8) 		5.7
(-3) 		15
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.1
(-2.5)
A 		2.8
(-3)
A 		3.2
(-2.8)
A 		6.2
(-1.7)
A 		18
(3)
A 		10.3
(-0)
A 		15
B 5.1
(0.1)
A 		6.8
(2.3)
A 		5.2
(0.2)
A 		2.8
(-3)
A 		3.9
(-1.5)
A 		7.3
(3)
A 		5
C 3.2
(-2.9)
A 		22.6
(1.7)
A 		2.7
(-3)
A 		28
(3)
A 		9.6
(-1.4)
A 		4.5
(-2.6)
A 		25
avr 4.1
(-2.7) 		10.7
(1.9) 		3.7
(-3) 		12.3
(3) 		10.5
(1.7) 		7.4
(-0.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(-1.3)
A 		0.9
(-3)
A 		1.5
(-0.4)
A 		2.3
(3)
A 		1
B 6.2
(3)
A 		1.8
(-1.6)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		6
C 5.7
(3)
A 		1.8
(-3)
A 		2.7
(-1.6)
A 		4.6
(1.3)
A 		4
avr 4.4
(3) 		1.5
(-3) 		1.7
(-2.6) 		2.5
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1
(-2.6)
A 		0.7
(-3)
A 		1.6
(-1.9)
A 		5.4
(3)
A 		2.5
(-0.7)
A 		5
B 1.8
(0.2)
A 		2.3
(1.7)
A 		1.3
(-1.4)
A 		0.8
(-3)
A 		1.6
(-0.5)
A 		2.7
(3)
A 		2
C 1.2
(-2.5)
A 		6.9
(3)
A 		0.7
(-3)
A 		5.6
(1.7)
A 		3.1
(-0.7)
A 		1.5
(-2.2)
A 		6
avr 1.3
(-2) 		3.4
(3) 		0.9
(-3) 		2.7
(1.3) 		3.4
(3) 		2.2
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12521
Sequence Type Exemplar sequence
Representative Public ID F35E12.1 NCBI
Target Description F35E12.1 /REP_DB=WormBase Gene ID /WP=CE09916 /TR=O02354 /GB=CAB04269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073995
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032240 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13722594:13724786:1 None
NM_073995 NCBI Caenorhabditis elegans F35E12.1 (F35E12.1) mRNA, complete cds. None
F35E12.1 ENSEMBL cdna:known chromosome:CEL140:V:13723337:13724786:1 gene:F35E12.1 None
SNAP00000032226 ENSEMBL cdna:SNAP chromosome:CEL140:V:13723409:13724786:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13723336-13725210(+) 78.41 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl F35E12.1
Entrez Gene 185303 Entrez gene
SwissProt O02354 EMBL-EBI
WormBase CE32650 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04269 Hypothetical protein F35E12.1 [Caenorhabditis elegans] ref|NP_506396.2| F35E12.1 [Caenorhabditis elegans] 1.0E-171
blast CAB04269 Hypothetical protein F35E12.1 [Caenorhabditis elegans] ref|NP_506396.2| F35E12.1 [Caenorhabditis elegans] 1.0E-146
blast CAB04269 Hypothetical protein F35E12.1 [Caenorhabditis elegans] ref|NP_506396.2| F35E12.1 [Caenorhabditis elegans] 1.0E-110
blast CAE58066 Hypothetical protein CBG01145 [Caenorhabditis briggsae] 4.0E-59
blast AAF39874 Hypothetical protein H10D18.2 [Caenorhabditis elegans] ref|NP_504056.1| H10D18.2 [Caenorhabditis elegans] 2.0E-56
blast AAF39874 Hypothetical protein H10D18.2 [Caenorhabditis elegans] ref|NP_504056.1| H10D18.2 [Caenorhabditis elegans] 3.0E-56
blast CAE58066 Hypothetical protein CBG01145 [Caenorhabditis briggsae] 5.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.6E-55
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.7E-50
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.6E-55
Sequence
Target Sequence 
>C. ELEGANS:192595_AT
tatgcacagatcttggtcatccaaagagattaccgatcttgatatttatggaacaaaagc
ggcagagtcctgggctggtgaattccagaaaaagggatgggaatctaatatttatacaaa
agataccgaaaagtcgggaatcgggcatgcaacccagatggtttggtctcaagcctactt
aattggatgtggagttaaggattgtggtcctgataaaacaaaaaagaacatgcataagat
tacagtagtgtgtcgatatatagaaaaccactactacatttcctcaagcttattttcaga
ggaaacatcaaagataccaacatctacaatgaaggaaagacgtgttctgcgtgcccatct
tcagcaaaatgcgagcctgaatccggtctttgtacttaattttgtcgtgttcacaatatt
tacaaagctcaaaagttttaaatggaggaacaaatgtacatacaattccttatatgaaaa
gttgtttgatgcagttggccctgtttttatggtcaatgattctccggtcgctgaaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCACAGATCTTGGTCATCCAAA 505 657 594 Antisense
AAAAGCGGCAGAGTCCTGGGCTGGT 461 129 648 Antisense
GGGAATCGGGCATGCAACCCAGATG 555 491 729 Antisense
AGATGGTTTGGTCTCAAGCCTACTT 17 1 749 Antisense
ACTACATTTCCTCAAGCTTATTTTC 148 101 866 Antisense
AAGGAAAGACGTGTTCTGCGTGCCC 24 161 925 Antisense
GCGTGCCCATCTTCAGCAAAATGCG 9 293 942 Antisense
AAAATGCGAGCCTGAATCCGGTCTT 486 133 959 Antisense
AAGTTGTTTGATGCAGTTGGCCCTG 493 155 1072 Antisense
GTTGGCCCTGTTTTTATGGTCAATG 336 435 1087 Antisense
AATGATTCTCCGGTCGCTGAAATCC 697 163 1108 Antisense
Sequence Source Affymetrix Proprietary Database