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[192594_at] Zinc finger, C4 type (two domains)

Description ZK1037.4 /REP_DB=WormBase Gene ID /WP=CE16756 /TR=O45986 /GB=CAB03503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 74      4grp_total > 26      6grp_cgc > 76      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 10.6
(-3)
A 		51.6
(3)
A 		18.2
(-1.9)
A 		21.9
(-1.3)
A 		41
B 41.1
(-0.5)
A 		30.8
(-3)
A 		56
(3)
A 		49
(1.3)
A 		25
C 44
(-0.5)
A 		62.8
(1.5)
A 		20.2
(-3)
A 		77.1
(3)
A 		57
avr 31.9
(-2.9) 		48.4
(2.7) 		31.5
(-3) 		49.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.1
(-0.9)
A 		3.3
(-3)
A 		37.3
(2.7)
A 		39.4
(3)
A 		22.6
(0.2)
A 		20
(-0.2)
A 		36
B 4.9
(-3)
A 		27.9
(0.1)
A 		5.5
(-2.9)
A 		32.9
(0.8)
A 		49.7
(3)
A 		36.7
(1.3)
A 		45
C 36.2
(0.2)
A 		12.5
(-3)
A 		56.3
(3)
A 		52.4
(2.5)
A 		21.4
(-1.8)
A 		27.9
(-0.9)
A 		44
avr 19.1
(-2) 		14.6
(-3) 		33
(1.1) 		41.6
(3) 		31.2
(0.7) 		28.2
(0) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.9
(-2.5)
A 		11.2
(3)
A 		4.8
(-1.8)
A 		3.2
(-3)
A 		8
B 13.1
(3)
A 		7.6
(-3)
A 		13
(2.9)
A 		10.4
(0.1)
A 		6
C 14.6
(1.1)
A 		18.1
(3)
A 		7
(-3)
A 		13
(0.2)
A 		11
avr 10.5
(0.3) 		12.3
(3) 		8.3
(-3) 		8.9
(-2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3
(-1.8)
A 		1.2
(-3)
A 		8.1
(1.7)
A 		10
(3)
A 		6.8
(0.8)
A 		4.9
(-0.5)
A 		9
B 1.7
(-2.9)
A 		9.3
(-0.5)
A 		1.3
(-3)
A 		8.7
(-0.7)
A 		20.2
(3)
A 		13.7
(0.9)
A 		19
C 13.4
(2.5)
A 		3.8
(-3)
A 		14.3
(3)
A 		10.5
(0.8)
A 		6.9
(-1.2)
A 		9.3
(0.1)
A 		11
avr 6
(-1.9) 		4.8
(-3) 		7.9
(-0.1) 		9.7
(1.5) 		11.3
(3) 		9.3
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12933
Sequence Type Exemplar sequence
Representative Public ID ZK1037.4 NCBI
Target Description ZK1037.4 /REP_DB=WormBase Gene ID /WP=CE16756 /TR=O45986 /GB=CAB03503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074396 NCBI Caenorhabditis elegans ZK1037.4 (ZK1037.4) mRNA, complete cds. 11/11 None
GENEFINDER00000019053 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15319083:15325118:1 11/11 None
ZK1037.4 ENSEMBL cdna:known chromosome:CEL140:V:15319083:15322820:1 gene:ZK1037.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019039 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15319082-15322820(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-246
Ensembl ZK1037.4
Entrez Gene 191499 Entrez gene
SwissProt O45986 EMBL-EBI
WormBase CE16756 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03503 Hypothetical protein ZK1037.4 [Caenorhabditis elegans] ref|NP_506797.1| ZK1037.4 [Caenorhabditis elegans] 0.0
blast CAB07327 Hypothetical protein C29F7.2 [Caenorhabditis elegans] ref|NP_510235.2| C29F7.2 [Caenorhabditis elegans] 1.0E-152
blast CAE61448 Hypothetical protein CBG05337 [Caenorhabditis briggsae] 1.0E-144
blast CAB07327 Hypothetical protein C29F7.2 [Caenorhabditis elegans] ref|NP_510235.2| C29F7.2 [Caenorhabditis elegans] 1.0E-101
blast CAE61448 Hypothetical protein CBG05337 [Caenorhabditis briggsae] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-14
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 2.1E-6
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-17
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.6E-19
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 2.1E-6
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 8.3E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.2E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.9E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.1E-10
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019053 6 820-842,849-871,891-913,934-956,960-982,989-1011
Sequence
Target Sequence 
>C. ELEGANS:192594_AT
aaaatagctgccgcagttgtcgcctgcagaaatgtctaaatgttgggatgaaccccaaag
ctatccaacatcgtgacccaattggacaacgaagcccaccgaaagatgactcggattccc
agaaatcagatcttcagttcctactcgatctccagaagaaacaacgaattcgcaatcaga
aatatggaattcaactcaaaaacgaccgaagtgttaagaagcaatatcgtccggcaaatg
cggacgatatccgactgacaatgagcttgggatttcaaaatgcgatcagttgggcgaacc
cttttgaagcgttcaaaaacttgacggattccgaaaaagcagcggttatgtcggaattcg
gagtcgcatttgtgttgatagagcaggcatttaaatcggcaaaggaggccgatgaaggag
tctggttacttcaaaataacacatttctgggattgaaagaaggggagagtgtgcaagcaa
aaattaattccgagttcgttaaaactttgctgaaaactctctgcgaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATAGCTGCCGCAGTTGTCGCCT 617 129 1160 Antisense
AGTTGTCGCCTGCAGAAATGTCTAA 149 65 1174 Antisense
CCAAAGCTATCCAACATCGTGACCC 381 275 1214 Antisense
AACGAAGCCCACCGAAAGATGACTC 412 141 1247 Antisense
GATGACTCGGATTCCCAGAAATCAG 542 411 1264 Antisense
AAATCAGATCTTCAGTTCCTACTCG 480 117 1282 Antisense
GGACGATATCCGACTGACAATGAGC 655 523 1401 Antisense
AATGCGATCAGTTGGGCGAACCCTT 583 165 1438 Antisense
GTCGGAATTCGGAGTCGCATTTGTG 35 471 1509 Antisense
GAGGCCGATGAAGGAGTCTGGTTAC 403 405 1564 Antisense
TTTGCTGAAAACTCTCTGCGAACCA 469 667 1665 Antisense
Sequence Source Affymetrix Proprietary Database