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[192593_at] Zinc finger, C4 type (two domains)

Description T09E11.2 /REP_DB=WormBase Gene ID /WP=CE13499 /TR=O02305 /GB=CAB03532.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 43      4grp_total > 32      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4.7
(-3)
A 		12.7
(3)
A 		6
(-2)
A 		6.5
(-1.7)
A 		8
B 2
(-3)
A 		6.8
(-2.2)
A 		37.8
(3)
A 		16.6
(-0.6)
A 		36
C 4
(-2.9)
A 		14.2
(1.4)
A 		3.7
(-3)
A 		18.1
(3)
A 		14
avr 3.6
(-3) 		11.2
(0.7) 		15.8
(3) 		13.7
(2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.2
(3)
A 		3.2
(-2.1)
A 		4
(-1.7)
A 		3.5
(-2)
A 		3.5
(-2)
A 		1.5
(-3)
A 		12
B 27.2
(3)
A 		3.8
(-2.5)
A 		3.3
(-2.6)
A 		1.6
(-3)
A 		3.8
(-2.5)
A 		2.4
(-2.8)
A 		26
C 3.5
(-2.9)
A 		3.9
(-2.8)
A 		30.7
(3)
A 		10.3
(-1.4)
A 		25.3
(1.8)
A 		2.9
(-3)
A 		28
avr 14.6
(3) 		3.6
(-2.4) 		12.7
(2.1) 		5.1
(-1.6) 		10.9
(1.2) 		2.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-0.5)
A 		2.8
(3)
A 		1.6
(-0.8)
A 		0.9
(-3)
A 		2
B 0.6
(-3)
A 		1.7
(-2.2)
A 		8.8
(3)
A 		3.5
(-0.9)
A 		8
C 1.3
(-3)
A 		4.1
(3)
A 		1.3
(-3)
A 		3
(0.6)
A 		3
avr 1.2
(-3) 		2.9
(0.8) 		3.9
(3) 		2.5
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(3)
A 		1.1
(-0.9)
A 		0.9
(-1.5)
A 		0.9
(-1.5)
A 		1
(-1.2)
A 		0.4
(-3)
A 		2
B 9.5
(3)
A 		1.3
(-2.4)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		1.5
(-2.3)
A 		0.9
(-2.7)
A 		9
C 1.3
(-2.8)
A 		1.2
(-2.8)
A 		7.8
(2.7)
A 		2.1
(-2.1)
A 		8.2
(3)
A 		1
(-3)
A 		7
avr 4.4
(3) 		1.2
(-2.3) 		3.2
(1) 		1.1
(-2.5) 		3.6
(1.7) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1604
Sequence Type Exemplar sequence
Representative Public ID T09E11.2 NCBI
Target Description T09E11.2 /REP_DB=WormBase Gene ID /WP=CE13499 /TR=O02305 /GB=CAB03532.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060721 NCBI Caenorhabditis elegans T09E11.2 (T09E11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000042472 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12349288:12350948:1 11/11 None
T09E11.2 ENSEMBL cdna:known chromosome:CEL140:I:12349267:12350872:1 gene:T09E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042459 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12349197-12350803(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-217
Ensembl T09E11.2
Entrez Gene 188330 Entrez gene
SwissProt O02305 EMBL-EBI
WormBase CE13499 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03532 Hypothetical protein T09E11.2 [Caenorhabditis elegans] ref|NP_493122.1| T09E11.2 [Caenorhabditis elegans] 0.0
blast CAB05462 Hypothetical protein C54C8.1 [Caenorhabditis elegans] ref|NP_493156.2| C54C8.1 [Caenorhabditis elegans] 4.0E-88
blast CAB05622 Hypothetical protein T15D6.6 [Caenorhabditis elegans] ref|NP_493137.2| Nuclear Hormone Receptor family member (nhr-77) [Caenorhabditis elegans] 7.0E-88
blast CAB05462 Hypothetical protein C54C8.1 [Caenorhabditis elegans] ref|NP_493156.2| C54C8.1 [Caenorhabditis elegans] 2.0E-79
blast CAB05622 Hypothetical protein T15D6.6 [Caenorhabditis elegans] ref|NP_493137.2| Nuclear Hormone Receptor family member (nhr-77) [Caenorhabditis elegans] 3.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.2E-6
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-12
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.9E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-12
Sequence
Target Sequence 
>C. ELEGANS:192593_AT
aaagttagtaactcgagcctcttcaagttttacctgaatcaagtggaaaaagctgtcaaa
ctaagacagaagaacacactaactatcaaaacaaatgcggaacttttgaaaatagtagcc
actcagcaagaattggcattggaagcatgcaggacgtgccctggcatggatttacttgac
aaggaagatcgtaaagtggttcagaaatattttgtgttttctaatgtttggatagaatca
acatggttatatagtttagcgaaggaacatctcgaaactgaaaataatctgaattttgac
ataaatttgaagaaattcatcgagcaagtcaagtcaactctgttattttcattttctcaa
ttcaaactcaacatctttgagctcgcagcattcaaagcaatatgcatatggaaattgatt
tatcacgagacaagccgagccatgaaaattattgctcaagaacactatgatggggtcgct
agtgcattgcgaaactattacgagactcatacatcgatggatcactcggaaatagccatt
cgaataggcgagatcacgttgctagttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTAGTAACTCGAGCCTCTTCA 161 1 532 Antisense
TCGAGCCTCTTCAAGTTTTACCTGA 297 603 544 Antisense
ATTGGAAGCATGCAGGACGTGCCCT 485 3 669 Antisense
CGTGCCCTGGCATGGATTTACTTGA 339 243 686 Antisense
AACTCTGTTATTTTCATTTTCTCAA 423 141 867 Antisense
TCAACATCTTTGAGCTCGCAGCATT 117 631 899 Antisense
TTTATCACGAGACAAGCCGAGCCAT 124 673 950 Antisense
TATGATGGGGTCGCTAGTGCATTGC 439 655 997 Antisense
GAGACTCATACATCGATGGATCACT 689 393 1033 Antisense
GGATCACTCGGAAATAGCCATTCGA 272 511 1050 Antisense
AGGCGAGATCACGTTGCTAGTTGTT 408 53 1077 Antisense
Sequence Source Affymetrix Proprietary Database