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[192592_s_at]

Description W09C5.6B /REP_DB=WormBase Gene ID /WP=CE20169 /GEN=rpl-31 /TR=Q9U331 /GB=CAB63332.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ribosomal protein L31e
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 08      6grp_total > 42      4grp_total > 16      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13718
1 2 3 4 range
A 23692.3
(-3)
P 		27807.2
(-1.1)
P 		28774.8
(-0.7)
P 		37007.3
(3)
P 		13315
B 23964.2
(-3)
P 		26555.8
(-1)
P 		29407.6
(1.2)
P 		31815.5
(3)
P 		7851
C 23504.2
(-2.9)
P 		24049.3
(-2.6)
P 		23288.9
(-3)
P 		34518.6
(3)
P 		11230
avr 23720.2
(-3) 		26137.4
(-1.6) 		27157.1
(-1.1) 		34447.1
(3) 		10727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7975
1 2 3 4 5 6 range
A 21281.2
(1.6)
P 		19471.4
(0.1)
P 		23065.6
(3)
P 		19657.8
(0.3)
P 		15628.8
(-3)
P 		17767.3
(-1.3)
P 		7437
B 19760.9
(0)
P 		19036.4
(-0.5)
P 		23604
(3)
P 		18570.2
(-0.9)
P 		15938.6
(-2.9)
P 		15824
(-3)
P 		7780
C 18429.9
(-2.2)
P 		19213.7
(0.2)
P 		20117.3
(3)
P 		18584.3
(-1.7)
P 		19193.9
(0.2)
P 		18157.2
(-3)
P 		1960
avr 19824
(0.3) 		19240.5
(-0.4) 		22262.3
(3) 		18937.4
(-0.7) 		16920.4
(-3) 		17249.5
(-2.6) 		5342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3209
1 2 3 4 range
A 8626.4
(3)
P 		6036.2
(-1.8)
P 		7522.3
(0.9)
P 		5417.2
(-3)
P 		3209
B 7642
(3)
P 		6558.7
(-3)
P 		6814.4
(-1.6)
P 		6779.9
(-1.8)
P 		1083
C 7780.5
(2.1)
P 		6914.3
(-0.1)
P 		8116.9
(3)
P 		5820.4
(-3)
P 		2297
avr 8016.3
(3) 		6503.1
(-1.5) 		7484.5
(1.4) 		6005.8
(-3) 		2011

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3188
1 2 3 4 5 6 range
A 3923
(-3)
P 		6925
(3)
P 		5023.2
(-0.8)
P 		4985.7
(-0.9)
P 		4716.1
(-1.4)
P 		4325.8
(-2.2)
P 		3002
B 6875.8
(3)
P 		6336.4
(1.3)
P 		5731.8
(-0.5)
P 		4918.6
(-3)
P 		6475.7
(1.8)
P 		5900.7
(0)
P 		1957
C 6831.2
(3)
P 		5862.7
(1.1)
P 		5120.2
(-0.3)
P 		3737.3
(-3)
P 		6210.9
(1.8)
P 		6078.3
(1.5)
P 		3094
avr 5876.7
(1.4) 		6374.7
(3) 		5291.7
(-0.6) 		4547.2
(-3) 		5800.9
(1.1) 		5434.9
(-0.1) 		1828
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1918
Sequence Type Exemplar sequence
Representative Public ID W09C5.6B NCBI
Target Description W09C5.6B /REP_DB=WormBase Gene ID /WP=CE20169 /GEN=rpl-31 /TR=Q9U331 /GB=CAB63332.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ribosomal protein L31e
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060990(11), NM_060991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060990 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-31) (rpl-31) mRNA, complete cds. 11/11 A 
NM_060991 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-31) (rpl-31) mRNA, complete cds. 11/11 None
SNAP00000012968 ENSEMBL cdna:SNAP chromosome:CEL140:I:13661110:13667244:-1 11/11 None
GENEFINDER00000013011 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13661110:13661803:-1 11/11 None
W09C5.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:13661057:13661822:-1 gene:W09C5.6 11/11 A 
W09C5.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:13661064:13662196:-1 gene:W09C5.6 11/11 A 
W09C5.6b.3 ENSEMBL cdna:known chromosome:CEL140:I:13661110:13661791:-1 gene:W09C5.6 11/11 None
W09C5.6b.4 ENSEMBL cdna:known chromosome:CEL140:I:13661110:13661813:-1 gene:W09C5.6 11/11 A 
W09C5.6b.1 ENSEMBL cdna:known chromosome:CEL140:I:13661110:13661814:-1 gene:W09C5.6 11/11 A 
W09C5.6b.5 ENSEMBL cdna:known chromosome:CEL140:I:13661110:13661744:-1 gene:W09C5.6 11/11 None
W09C5.6b.2 ENSEMBL cdna:known chromosome:CEL140:I:13661110:13661612:-1 gene:W09C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13661040-13661253(-) 100.0 100.0
Public Domain and Genome References
Ensembl W09C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63334 Hypothetical protein W09C5.8 [Caenorhabditis elegans] ref|NP_493394.1| W09C5.8 [Caenorhabditis elegans] 7.0E-99
blast CAE72582 Hypothetical protein CBG19770 [Caenorhabditis briggsae] 2.0E-92
blast CAB63331 Hypothetical protein W09C5.6a [Caenorhabditis elegans] ref|NP_493391.1| Ribosomal Protein, Large subunit family member (rpl-31) [Caenorhabditis elegans] sp|Q9U332|RL31_CAEEL 60S ribosomal protein L31 7.0E-59
blast CAB63331 Hypothetical protein W09C5.6a [Caenorhabditis elegans] ref|NP_493391.1| Ribosomal Protein, Large subunit family member (rpl-31) [Caenorhabditis elegans] sp|Q9U332|RL31_CAEEL 60S ribosomal protein L31 4.0E-58
blast CAE72584 Hypothetical protein CBG19772 [Caenorhabditis briggsae] 6.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000054 EMBL-EBI Ribosomal protein L31e 6.0E-56
Pfam IPR004203 EMBL-EBI Cytochrome c oxidase subunit IV 1.7E-78
Pfam IPR000054 EMBL-EBI Ribosomal protein L31e 6.0E-56
Pfam IPR000054 EMBL-EBI Ribosomal protein L31e 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:192592_S_AT
gaagaccaacgatgtgcgtgtcgacaccaagctcaacaagttcatctggtccaagggaat
caagaacgttccatacagagttcgtgtccgtctctcccgccgccgtaacgaggatgagga
ctccgctcaaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACCAACGATGTGCGTGTCGAC 273 337 15 Antisense
GACCAACGATGTGCGTGTCGACACC 230 383 18 Antisense
CGATGTGCGTGTCGACACCAAGCTC 250 249 24 Antisense
ACAAGTTCATCTGGTCCAAGGGAAT 158 109 50 Antisense
TGGTCCAAGGGAATCAAGAACGTTC 276 551 61 Antisense
GAACGTTCCATACAGAGTTCGTGTC 339 345 78 Antisense
GTTCCATACAGAGTTCGTGTCCGTC 354 441 82 Antisense
CCATACAGAGTTCGTGTCCGTCTCT 170 271 85 Antisense
CCCGCCGCCGTAACGAGGATGAGGA 674 259 110 Antisense
GTAACGAGGATGAGGACTCCGCTCA 497 461 119 Antisense
AGGATGAGGACTCCGCTCAAAAGCT 409 57 125 Antisense
Sequence Source Affymetrix Proprietary Database