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[192589_at] nuclear transport factor 2 like

Description R05D11.3 /REP_DB=WormBase Gene ID /WP=CE06238 /TR=SW:Q21735 /GB=CAA99890.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear transport factor 2 like
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 46      6grp_total > 51      4grp_total > 58      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2222
1 2 3 4 range
A 2235.9
(-1.8)
P 		3937.4
(3)
P 		3746.9
(2.5)
P 		1802
(-3)
P 		2135
B 2483.7
(-0.6)
P 		3536.5
(3)
P 		3495
(2.9)
P 		1797.8
(-3)
P 		1739
C 2603.4
(-0.2)
P 		3104.6
(1.4)
P 		3610.5
(3)
P 		1715.5
(-3)
P 		1895
avr 2441
(-0.8) 		3526.2
(2.7) 		3617.5
(3) 		1771.8
(-3) 		1846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1971
1 2 3 4 5 6 range
A 2832.5
(-1)
P 		2945
(-0.6)
P 		4035.6
(3)
P 		3088.7
(-0.2)
P 		2741.1
(-1.3)
P 		2240.2
(-3)
P 		1795
B 2242.6
(-3)
P 		3171.4
(0.2)
P 		3988
(3)
P 		3248.1
(0.5)
P 		2552.8
(-1.9)
P 		2467
(-2.2)
P 		1745
C 2311.4
(-2.1)
P 		3186
(1.3)
P 		3257.1
(1.5)
P 		3637.7
(3)
P 		2064.8
(-3)
P 		2830.6
(-0.1)
P 		1573
avr 2462.2
(-3) 		3100.8
(-0) 		3760.2
(3) 		3324.8
(1) 		2452.9
(-3) 		2512.6
(-2.7) 		1307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 995
1 2 3 4 range
A 814.1
(1.6)
P 		854.7
(2)
P 		979.5
(3)
P 		263.8
(-3)
P 		716
B 792
(2)
P 		873.4
(3)
P 		809.9
(2.2)
P 		383.1
(-3)
P 		490
C 861.8
(0.5)
P 		892.6
(0.7)
P 		1258.4
(3)
P 		289.3
(-3)
P 		969
avr 822.6
(1.4) 		873.6
(1.8) 		1015.9
(3) 		312.1
(-3) 		704

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 522.1
(-3)
P 		1047.4
(3)
P 		878.9
(1.1)
P 		783.4
(-0)
P 		827.1
(0.5)
P 		545.4
(-2.7)
P 		525
B 780.3
(-3)
P 		1055.6
(3)
P 		968.4
(1.1)
P 		860.3
(-1.3)
P 		1037.2
(2.6)
P 		919.9
(0)
P 		275
C 856.8
(0.7)
P 		972.1
(3)
P 		829
(0.2)
P 		731.5
(-1.7)
P 		668.1
(-3)
P 		947.6
(2.5)
P 		304
avr 719.7
(-3) 		1025
(3) 		892.1
(0.4) 		791.7
(-1.6) 		844.1
(-0.6) 		804.3
(-1.3) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1128
Sequence Type Exemplar sequence
Representative Public ID R05D11.3 NCBI
Target Description R05D11.3 /REP_DB=WormBase Gene ID /WP=CE06238 /TR=SW:Q21735 /GB=CAA99890.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear transport factor 2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059921 NCBI Caenorhabditis elegans associated with RAN (nuclear import/export) function family member (ran-4) (ran-4) mRNA, complete cds. 11/11 None
SNAP00000034017 ENSEMBL cdna:SNAP chromosome:CEL140:I:8599342:8599872:1 11/11 None
GENEFINDER00000034027 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8599342:8599872:1 11/11 None
R05D11.3.1 ENSEMBL cdna:known chromosome:CEL140:I:8599337:8600095:1 gene:R05D11.3 11/11 None
R05D11.3.2 ENSEMBL cdna:known chromosome:CEL140:I:8599340:8600082:1 gene:R05D11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8599272-8599803(+) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear transport factor 2 like
Gene Symbol ran-4
Ensembl R05D11.3
Entrez Gene 172648 Entrez gene
SwissProt Q21735 EMBL-EBI
WormBase CE06238 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19700.1.S1_AT similar to Nuclear transport factor 2 (NTF-2) cfa
CANINE_2:CFAAFFX.10275.1.S1_X_AT similar to Nuclear transport factor 2 (NTF-2) cfa
CANINE_2:CFAAFFX.25105.1.S1_AT similar to Nuclear transport factor 2 (NTF-2) cfa
CANINE_2:CFAAFFX.6434.1.S1_X_AT similar to Nuclear transport factor 2 (NTF-2) cfa
DROSOPHILA_2:1627046_AT Nuclear transport factor-2 dm
DROSGENOME1:153255_AT Nuclear transport factor-2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6606 protein import into nucleus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99890 Hypothetical protein R05D11.3 [Caenorhabditis elegans] ref|NP_492322.1| associated with RAN (nuclear import/export) function family member (ran-4) [Caenorhabditis elegans] sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 (NTF-2) 1.0E-72
blast CAE67101 Hypothetical protein CBG12512 [Caenorhabditis briggsae] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002075 EMBL-EBI Nuclear transport factor 2 (NTF2) 3.6E-41
Sequence
Target Sequence 
>C. ELEGANS:192589_AT
ggccttcattcaacattactactcaaagttcgatgttggcgatggaatgagtcgtgctca
aggactctccgatttgtacgacccagaaaactcttacatgacttttgaaggacagcaagc
gaaaggccgtgacggaattctccaaaagttcacgactctcggattcacaaaaattcaacg
agcgatcactgtgattgactctcagcctctgtatgatggatcaattcaagtgatggttct
tggtcagctcaagaccgacgaagatccaatcaatcccttctcgcaagtctttattctccg
tccaaacaatcagggttcctacttcatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCTTCATTCAACATTACTACTCA 511 543 48 Antisense
GCTCAAGGACTCTCCGATTTGTACG 585 301 103 Antisense
GTACGACCCAGAAAACTCTTACATG 359 459 123 Antisense
GACAGCAAGCGAAAGGCCGTGACGG 502 367 158 Antisense
AAAGTTCACGACTCTCGGATTCACA 20 121 192 Antisense
GATCACTGTGATTGACTCTCAGCCT 188 421 231 Antisense
GACTCTCAGCCTCTGTATGATGGAT 653 373 244 Antisense
AAGTGATGGTTCTTGGTCAGCTCAA 318 159 275 Antisense
TCAGCTCAAGACCGACGAAGATCCA 77 625 291 Antisense
TCTTTATTCTCCGTCCAAACAATCA 686 615 335 Antisense
CAATCAGGGTTCCTACTTCATCGGA 510 171 354 Antisense
Sequence Source Affymetrix Proprietary Database